LOC111194493


Basic Information

Item Value
gene id LOC111194493
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5217173 ~ 5221134 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678748.1
ATATAAGAAATCATTGAAAAAAgatcagaaatcacatccacattcaatgcaggaggcccaACATGCATATCCCATAGGTCCTTTTATGGAACATGATAGAAATCATAGGATGCAATACTAGACTATTAGTAAGATAtgaattatactttaattatactTTAAAGATGTACaaattgctgtttacatagGTGAGTGGGGTAAGTTGCTGAAtgtattcattagaaggggtctCCACAAACAATTCTGTCCATACAGTATAACTTTGCAATAAAGCAATAAAGTTAATGGTACAAACATACAACTCACACAGAGCTAACTGGTAGTTATGGAGAAATAGAGTTTGAAGCAATCATATCAACTGCTTTGGTTCAGACAGGCTAAAGGGAATCTTTACCACCATGTTACAAAAGGCCTTGTTGTGTCATATGACTGACTGTACTTCTGAGTCATATCTTTCTAATGGAGCCTATGAATCATAGTGATATGCCCGGGCAAACTCAGACTGCTGGGACTGATCTTAgagttctgttgtttttttttagttgtgaATGCTGTTGTTCATCAATGTTGAGGCCTTTAGTAAAAAAGACAATTAATTcactgtatgtaaaatacaaCATGACAATAACGTGAAACTGTTACTCAGTTTAGAAGTAGCAGAACACactgtttacagtgtgtttcAGAATTACAGAATATACTGCACTATTAATACTGTAGTAGTAAAGGTGCTTCAAAGAAGAATTTCCACAGAATTTCAAAGAGAGCTTGAGATCTAGATCATGAATTTAGTACATGACTGTACATGTCCAAACAATTACATTAAGTGTTCTGTTAATTAATGCCATTATAAACAAGGTAAGTCTTACATGTTGCAGTTGACATGACTTATCAGAGTTTGGGCAAGGCCTGGACCACATGTATACtagaaaatatacattatagaaggcattaccactcacagtggacagtgcagtgagtggcaatgattgtgaccagcaaTATCTGACAAAAACTGTCCAAGCATACAGACAAGCGACTCTGTCAGAAATATCATAATCTTTATCCACGTTCAATGCAGAAAGCCCCACATGCATATCtcatagatcagcacagcattCTTTAGCCTCCACAGAACATGGCAGAAGTCATGTAGTTTGTAGATATACTACATCCTGTCTCATGACGTGACGTGCCATGCGTCAGTGAGCAACTATTTACATATAAGTTACATGAGTTTGTTGTTAAAGAGTCTTTGTGGCGTGCAGTGCGACTGTGCACTGTGAAGATAAAGCTGGTATCCCATCAAGGAACACAAGATCTACGACTGGTAAAACTACTTTCGGTTCCATAAAGAACCCTTAAGCACCAATCACCAATATCttcttaataatattattaaataagaaaggagtataataaagtatgcagagaaacaaaggCATTAGCCTGTGTCCAGGCCCTTTGGTGTACGCCAGATCCTCATTTACTGAACAAATCCCTAATAAGAAATCATTGGTAAATATCAGAAATGGAATTTAGGATCATTTAGTAAATTAGGCTCCATATTTGTAAGTTGTGACAGTGCTAAGAACATTGCTGTGGATAAACATCCACTTAATCAAGTGAAGAACCGTTAAAACACATGGTTTGAAGCACCATCCTTACAATTAAGAGCATGCTCTAGCTTGTAACCTCCCTGTGCGTGTTTATAACATGTCTATAATTATGTGTCTGTGCTGTCTCTGTTTTAATGGCGTTTCCTATTTGAATATAATTTGGTTACAGTTTCCATGTTTGACGCCTCCGAATGTTGAGCACGTGGTTGTGTTCTACAAAGGGTTTCTCACAGGACAAAAGAGGAGGTTGCTGAAGGCACACTGACATCATTGTCTTGGCCTCTAGGCGGAAAAAGAGACTGAAAGCGAATAGGGACTGTTCTGAAACCGAggacgaagaaaaaaaaatcatcccaGTGTGCTGCCTCCCCCACCCACCGCTGGAATCCAGAGCTGCCGGTTTAACCCTGCAGTCGGTTAGCAGATCATTTTCACAGCTGAGCTGAAGGGAAGCATGGATCGGCGGGTCGAGTTGACCGGCTTTTTGTTGGCCGTCCTAGGCTGGATTTGCACCATCGTCACTTGGCAAATGCCCATGTGGTATGTGACCGGTACAGTGGATAACAACACAGACACTCTCGCTTTGTACTGGAACGGAGTTTGGTTAAACTGGCAGGATCTCAGCAAAGGGAGCCTGCACTGCAACTTCTACATGTCTTTGTTGTCTCTGGCTGATCACTTTCGCTCTCGGAGAGCCCTGGTCATCTCCTCTATGGCAATTGGAACACTGCCTGTATTGATCTACTTGACAGGCCTACTGAAGTTTCCTCAGTGGGTACTAATCAAGGCAACAGCTGGACTGGTTTATGTCATTTCGGGGTTGCTTCTACTGATAGTTGTATCTTGGACCACCCACATCACACAAGGCAGTCTGGACATTGATATCCAACTCACCACAGAATGGGGACCTGCTTTATTCTCAGGGTGGATAGGAACAGTGTTGCTGCTGGTTGGAGGAGGAATACTGTGCATCTACTGCTGTACAGCACCTATACAGATACAAAGAGGACCCGTACAGGCCAGTGTTCCACAGGAAGTAGAGCACCCACTCAATACTATACAAAGAACTGCATACGATAGCCCCTACAGACAAACTACTAGTCCCATTtgatggaagaaaaaaaaagtggactTTTGAATGCTTGAATATTGGGAATGCTGTGCAATTCCAATTGATTTTTTGGACATGTGCTACAAAACATTACTTTTTGACACCGTCTTTGTTTAAAGTAttgattttgtacattttccaAAGGACATTAGACATCAAATATTAATACTCCCTTAATTCCATGttttagcttgtccagaaatgcatgtgtaacgtGTGTAATTTAGGGGTGGCTCAATCTCTTGCAGACAAGACTACTATCGTAGACCTAAACATTGTCAGTACTATGCAAAAATGAATTCTTTTGTAAGAAAAATTCAGGAACACTGCCTTTTTGATAGTTTATAGTAAAGTATTGTCTAATATGATGCAGTTGCTTTAAGGCTATTACCTAACACCACTATTAAGAATTAAGGTGAGGTATTCATTTTCAAGACGACtgtaaacagtaaatattaacaCACTGTAATTTAGCTTGTCCAGAATGCATGTGTACACTCTACGGTTACTTAAGCCCATACAAACAGAATGTTAAACCCATTTGAGGGggaataaaaactgtaaaagtttTATGAATGCTTGAACATTGGGAAAGCTGCTTAATTCTTTTTGACATTTGACATgaaatattgctttttttttttttttttttttttttttacactgtcttTGTTCGGGGGAAAACTATTTTTGAACGTTTGACACTGGGAATACTGAGCAATTCCAAAGGATTTTTGGACATACGACAGAAATACTGCCTTTTTGATTGTTAAGTATTGTCAGAAGTTCAGTAGCTCTAAACTTGTTACATTATGTGCTTACCATTTTTAGCGAGATGTATATTTTCCAGAGGACTGCAAACAGGAAATTTTaattgtccaaaaatgcatgtgtaaaatgtgtacttTAAGTGTGACTTGCAAATGCTTAAACATTGCGAACACTGCGTAATACCAATGAAATATTTGGCACATGAAAAGAAACAACGCCTTTttgattgtttaaaatattcCCCGATATACAGTAGCTTCAAACTTGTTACATGATTTGTCTTAAAATTTTAGGGATATGTACATTTTCTAAAAGACTGTAAAATCTAAATGTTAATACTCTATAACTttgcttgtccagaaatgcatgtgtaaaatgtgtattgtTGGGgtgatttaaagttttaattaaatttccTGACTGTAGAAGAAGCCTACAAATACAATTTTCACATAATACTG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678748.1 True 3962 mRNA 0.38 1 5217173 5221134

Neighbor

gene id symbol gene type direction distance location
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 87 5215285 ~ 5217086 (+)
LOC103032228 NA coding upstream 5398 5210309 ~ 5211775 (+)
LOC111194492 NA coding upstream 10114 5204293 ~ 5207059 (+)
LOC111194610 NA coding upstream 13173 5201640 ~ 5204000 (+)
LOC103032323 LOC108424026 coding upstream 23084 5192825 ~ 5194089 (+)
LOC111194496 taf15,LOC107103138 coding downstream 41207 5262341 ~ 5273102 (+)
mmp28 mmp28 coding downstream 52781 5273915 ~ 5304919 (+)
LOC103043150 LOC108424020,LOC108280635 coding downstream 112737 5333871 ~ 5344070 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 470701 5691835 ~ 5912829 (+)
mlf1 NA coding downstream 694465 5915599 ~ 5932823 (+)
G149574 NA non-coding upstream 179379 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 282939 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 284336 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 307342 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 376832 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 2515 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 123710 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 151875 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 204758 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 565791 5786925 ~ 5816467 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 17188 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 102457 5111324 ~ 5114716 (+)
G149595 NA other upstream 114815 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 452328 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 657158 4559933 ~ 4560015 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 6784 5227918 ~ 5258861 (+)
G149754 NA other downstream 504135 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1361912 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1714207 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 2028031 7249165 ~ 7251366 (+)

Expression


Co-expression Network