LOC103032540 (cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975)


Basic Information

Item Value
gene id LOC103032540
gene name cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5215285 ~ 5217086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678749.1
tattattattcaacttTCACCACCTCTTTCAttaaaattcacaaaaatacttttaagcTTTTAAGCTCCAAACAGCCAAACACTTAATTCAAAAATCTGAATGTCTTATGCAACCATGGCCTAGAGCTAGGCTACACTGCCATCTACTGCTGTAACCTTGAAATATCCTTAGTGTGTAACACAAAGAAAATTTGGAAAAATTTTAGTaagtatttttgctttttaaacgtGTTTAAAATGTGGTTTTAAAGTTTTCCAGAAGTTTCTTGTCTCTCTGACCTATTTTTACTTTCCTCCTCTACAGGTTCCTCAATGGCTCTGCAGGTCCTGGGCATCACTCTGTCCATGATTGGCCTGGCCGGTACGATCATCATCTGTGCGCTGCCCATGTGGAAGGTCACGGCATTCATCGGCACCAACATTGTGGTGGCTCAGGTCTTCTGGGAGGGCCTGTGGATGACTTGCGTGTATGAGCGCACCGGCCAAATGCAGTGCAAGCTGTACGACGCCCTCTTGGACCTGGACCCCTCGCTGCAGGCCTCGCGTGGTCTTGTGGTCACCACCATGGCGCTTGCGTGCCTGGCCTTTGTGATCTTCCTGCTCGGGGCAGACTGCACCAACTGCCTGAGTAACCCAGGAGCCAAGGGCCGGATTGTGGTGGCATCCGGAATCACCTTCATGCTCTCGGGCCTCACCACCGTGGTGCCCGTGTCCTGGACGGCCGACTCCATCATCAGGGACTTCCACAACCCCATAGTGCACGAGGCACTGAAGAGGGAGATGGGAGCTGCCATCTATTTGGGCTGGGTCACCGCAGGGTTCTTGTTCATAGGTGGAGCAGTTCTTTGTACCAGCTGTCCAACAAAGAAGGTCAAACACTCATCAAGATACATGTCTGCAAAATCTGGAACCCAAAGCAGCTATGCTTTCAGGAACTATGTCTGAAGTTCTGGTCTAAAGATGATGGACAGGTTGAGTAAAGAGGAGGCAGAGCGTAAATTGGTCAAATATCAAATGTACACATTTTAAATCTTAACCCAAATGCTGTTAATACaacatatggacaaaagtattaggacatctgctcattcatagtttcttctgaaattaagagcatgtttttgttggagtaactgtttctactgtttattgaaaattgTAGATTTGACTGCATTTAGCAACAAGACCTTTAATTAGGTCAGGTTGTTTTACCTTACACCAAATTCGGTCAAGACACTATATgggcaaaagtaatgggacacctgTTAATTACCAATTCGTGGTCTATTACTCAGCCCCCTGATTCCAATTATCATTCCTGGGCTTTGTGTTAATTGGAAGGTGTAACAGATCTGATGGTCTATCAAAATTACATCAACTGTTCTCTttcaatcaaattaaatcaaatcacaTTTATTGTCATGCCAAAACACATTGGTATATGCAAGTAAAAAAGTAAGACGCACTGTCACTAACAGTCTTacaatgccaaaagtcatgggacagtttTATAACATCGCATGCTCATTTTCACCTCACCTCATACGCAACTGCCCCAATCAGCCCAACTAAAAGCCAATCTTCCATAGAGCTCAGGTCCACTGCTCAACAGCACAATGCAGGGGGGCTTTATACCACTCTAGCCCATGTCTGGCAttgggcatggtgccaataggtgcaaattaaactcaaattaaaataaactcatTGGATTGGTTAACTGCCCTGTGATCCTGCACATGTACAAGAAATTGACATTAAATCAATGCCACCTGGATATGGATTAAAAAGTGATAAAGAGA

Function

symbol description
cldnj Predicted to enable structural molecule activity. Acts upstream of or within lifelong otolith mineralization. Predicted to be located in cell junction and membrane. Predicted to be integral component of membrane. Predicted to be active in bicellular tight junction and plasma membrane. Is expressed in central nervous system; otic epithelium; otic vesicle; and ovary.

NR:

description
PREDICTED: claudin-4-like

GO:

id name namespace
GO:0031174 lifelong otolith mineralization biological_process
GO:0005886 plasma membrane cellular_component
GO:0005923 bicellular tight junction cellular_component
GO:0016021 integral component of membrane cellular_component
GO:0005198 structural molecule activity molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678749.1 True 1802 mRNA 0.44 1 5215285 5217086

Neighbor

gene id symbol gene type direction distance location
LOC103032228 NA coding upstream 3510 5210309 ~ 5211775 (+)
LOC111194492 NA coding upstream 8226 5204293 ~ 5207059 (+)
LOC111194610 NA coding upstream 11285 5201640 ~ 5204000 (+)
LOC103032323 LOC108424026 coding upstream 21196 5192825 ~ 5194089 (+)
LOC111194491 LOC108424027 coding upstream 26543 5186838 ~ 5188742 (+)
LOC111194493 NA coding downstream 87 5217173 ~ 5221134 (+)
LOC111194496 taf15,LOC107103138 coding downstream 45255 5262341 ~ 5273102 (+)
mmp28 mmp28 coding downstream 56829 5273915 ~ 5304919 (+)
LOC103043150 LOC108424020,LOC108280635 coding downstream 116785 5333871 ~ 5344070 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 474749 5691835 ~ 5912829 (+)
G149574 NA non-coding upstream 177491 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 281051 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 282448 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 305454 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 374944 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 6563 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 127758 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 155923 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 208806 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 569839 5786925 ~ 5816467 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 15300 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 100569 5111324 ~ 5114716 (+)
G149595 NA other upstream 112927 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 450440 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 655270 4559933 ~ 4560015 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 10832 5227918 ~ 5258861 (+)
G149754 NA other downstream 508183 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1365960 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1718255 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 2032079 7249165 ~ 7251366 (+)

Expression


Co-expression Network