LOC111194496 (taf15,LOC107103138)


Basic Information

Item Value
gene id LOC111194496
gene name taf15,LOC107103138
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5262341 ~ 5273102 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678755.1
TTATAAGTACTGCAGTGCGCGCTCAGTCCTCAGCGGGTCTTCCTGTGTTCGGGGCAGAAGAGGaggtttacttttttattttcatacgGAACTATGGCCTCTGATTCAGGCTACGGGCAGCCTGGAGCCCAACAAAGCTATGGCTCCTATGGAGGGTCCCAGGGCTATCAGCAGGCTGGGCAGggtTATGGACAAGGTAACGGAGGTGGCTCTTATGGGGGACAGAGCTACGAAGGTTATGGTCAATCAGCAGAAGGATATGGGCAGTCATCACAAAGTTACTCATCTGGTGGATAtggtcagcagcagcagcaacaaccaCCACAGCAACAACCACCACAGCAACAACAAACCTACGATAGTTATGGGCAGCACAGTTCTGATTCTTCATCAGGGTATGGGGACAAGTCTTACGGGCAGCAGAGTTCTTACGGGCAGCAGTCTGAAGGAGGATACAGCCAATCTGGGAGCTCGTATGGTGGCTCCTCACAGGGTGGTTATGGAAGGCGGAATGATGGTGAGAACAGGAGATATGGTGGAGATGATGGGGGTGACAGGTCTGATACTGGCTACAGAGGCAGAGGGCGTGGCGGGTATGATCGTGGAGGCAGTGACCGTGGAGGGTATGACCGAGGCGGTTACGACCGCGGAGGCTATGAGCGAggtggaagaggaggaggaggcccTTCCTTTGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAGAGAATATGGTCAAAAGGATGATGGAGGTGATGAACAGGACAACTCCGACAACAACACAATCTTTGTCCAAGGTCTTGGTGAGGATGTGTCCACACAGGAAGTCAGTGATTACTTCAAACAGATTGGAATCATTAAGGTAAATAAGAAGACTGGCAAACCCATGATCAATCTGTACACAGACAAAGCCACTGGCAGACTGAAGGGAGAAGCCACAGTTTCCTTTGATGACCCTCCTTCTGCCAAAGCTGCCATTGATTGGTTTGATGGCAAGGAGTTTAATGGTAAGCCCATTAAGGTCTCGTTTGCCACCAGAAGGGCTGAGTTCActcagagaggaggaggaggaggaggaggggggggagGCAGAGGGCGTGGAGGATTCAGAGGAAGAGGAGGCTTTGGTGGGGGTGGAGGTGGTCCAAATTTTGATGTGAAGGGAGGAGACTGGCCCTGCCCAAACAGCTCTTGTGGAAACATGAACTTTGCACGAAGATATGAATGCAACAAATGTGGTGCACCAAAACCAGGAGACAGCTTTGGAGACCGTGGTGGTGGTAGAGGAGGCTATGGCGGTGACCGTGGTGGTTTCCGAGGAGGCAGAGGAGGTGGCTTCCGAGGTGGAGACCGTGGTGGTGGATACAAGATGGGAGGAAGAGGGGAGCACAGAGAAGACAGACGAGACCGGCCATACTAAAGGATCTGAGCAAAGATGCAACCAAGAATCTGAACTGGGGCTGGGGAGGGTTAACATTAGGCTAAATGAAGGGATGGGATTGTTCCATTTTCCGGTCTTCATACTTTTTCTAGCAGTTTCTGCTGTATCAAGTGACACTCTGCTCGGAAGCATCAATGTGAATCTACTGTTTGAGGCTGAATGGATGAGGGGAGATGAAACATGAGGGGGGTGGGCGAGAGGtgattatttttgttactcCCTTTTTAATTTCCCTGACTAGTGGAATTTGCATTTAATGTGTTAGACTCGTCAGACTTCATATCATTGTTTTGTAAGATTGAATTGAACTGTTTTACTTGGGTTTTTCTTTTGCAAATGATATTAAACATTGTTCTGATCTTAA
>XM_022678756.1
TTTATAAGTACTGCAGTGCGCGCTCAGTCCTCAGCGGGTCTTCCTGTGTTCGGGGCAGAAGAGGaggtttacttttttattttcatacgGAACTATGGCCTCTGATTCAGGCTACGGGCAGCCTGGAGCCCAACAAAGCTATGGCTCCTATGGAGGGTCCCAGGGCTATCAGCAGGCTGGGCAGggtTATGGACAAGGTAACGGAGGTGGCTCTTATGGGGGACAGAGCTACGAAGGTTATGGTCAATCAGAAGGATATGGGCAGTCATCACAAAGTTACTCATCTGGTGGATAtggtcagcagcagcagcaacaaccaCCACAGCAACAACCACCACAGCAACAACAAACCTACGATAGTTATGGGCAGCACAGTTCTGATTCTTCATCAGGGTATGGGGACAAGTCTTACGGGCAGCAGAGTTCTTACGGGCAGCAGTCTGAAGGAGGATACAGCCAATCTGGGAGCTCGTATGGTGGCTCCTCACAGGGTGGTTATGGAAGGCGGAATGATGGTGAGAACAGGAGATATGGTGGAGATGATGGGGGTGACAGGTCTGATACTGGCTACAGAGGCAGAGGGCGTGGCGGGTATGATCGTGGAGGCAGTGACCGTGGAGGGTATGACCGAGGCGGTTACGACCGCGGAGGCTATGAGCGAggtggaagaggaggaggaggcccTTCCTTTGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAGAGAATATGGTCAAAAGGATGATGGAGGTGATGAACAGGACAACTCCGACAACAACACAATCTTTGTCCAAGGTCTTGGTGAGGATGTGTCCACACAGGAAGTCAGTGATTACTTCAAACAGATTGGAATCATTAAGGTAAATAAGAAGACTGGCAAACCCATGATCAATCTGTACACAGACAAAGCCACTGGCAGACTGAAGGGAGAAGCCACAGTTTCCTTTGATGACCCTCCTTCTGCCAAAGCTGCCATTGATTGGTTTGATGGCAAGGAGTTTAATGGTAAGCCCATTAAGGTCTCGTTTGCCACCAGAAGGGCTGAGTTCActcagagaggaggaggaggaggaggaggggggggagGCAGAGGGCGTGGAGGATTCAGAGGAAGAGGAGGCTTTGGTGGGGGTGGAGGTGGTCCAAATTTTGATGTGAAGGGAGGAGACTGGCCCTGCCCAAACAGCTCTTGTGGAAACATGAACTTTGCACGAAGATATGAATGCAACAAATGTGGTGCACCAAAACCAGGAGACAGCTTTGGAGACCGTGGTGGTGGTAGAGGAGGCTATGGCGGTGACCGTGGTGGTTTCCGAGGAGGCAGAGGAGGTGGCTTCCGAGGTGGAGACCGTGGTGGTGGATACAAGATGGGAGGAAGAGGGGAGCACAGAGAAGACAGACGAGACCGGCCATACTAAAGGATCTGAGCAAAGATGCAACCAAGAATCTGAACTGGGGCTGGGGAGGGTTAACATTAGGCTAAATGAAGGGATGGGATTGTTCCATTTTCCGGTCTTCATACTTTTTCTAGCAGTTTCTGCTGTATCAAGTGACACTCTGCTCGGAAGCATCAATGTGAATCTACTGTTTGAGGCTGAATGGATGAGGGGAGATGAAACATGAGGGGGGTGGGCGAGAGGtgattatttttgttactcCCTTTTTAATTTCCCTGACTAGTGGAATTTGCATTTAATGTGTTAGACTCGTCAGACTTCATATCATTGTTTTGTAAGATTGAATTGAACTGTTTTACTTGGGTTTTTCTTTTGCAAATGATATTAAACATTGTTCTGATCTTAA
>XM_022678757.1
TTTATAAGTACTGCAGTGCGCGCTCAGTCCTCAGCGGGTCTTCCTGTGTTCGGGGCAGAAGAGGaggtttacttttttattttcatacgGAACTATGGCCTCTGATTCAGGCTACGGGCAGCCTGGAGCCCAACAAAGCTATGGCTCCTATGGAGGGTCCCAGGGCTATCAGCAGGCTGGGCAGggtTATGGACAAGGTAACGGAGGTGGCTCTTATGGGGGACAGAGCTACGAAGGTTATGGTCAATCAGCAGAAGGATATGGGCAGTCATCACAAAGTTACTCATCTGGTGGATAtggtcagcagcagcagcaacaaccaCCACAGCAACAACCACCACAGCAACAACAAACCTACGATAGTTATGGGCAGCACAGTTCTGATTCTTCATCAGGGTATGGGGACAAGTCTTACGGGCAGCAGAGTTCTTACGGGCAGCAGTCTGAAGGAGGATACAGCCAATCTGGGAGCTCGTATGGTGGCTCCTCACAGGGTGGTTATGGAAGGCGGAATGATGGTGAGAACAGGAGATATGGTGGAGATGATGGGGGTGACAGGTCTGATACTGGCTACAGAGGCAGAGGGCGTGGCGGGTATGATCGTGGAGGCAGTGACCGTGGAGGGTATGACCGAGGCGGTTACGACCGCGGAGGCTATGAGCGAggtggaagaggaggaggaggcccTTCCTTTGGTATGGGTGGTGGTGACCGTGGTGGCTACAAAAATTACGGTGGACCCAGAGAATATGGTCAAAAGGATGATGGAGGTGATGAACAGGACAACTCCGACAACAACACAATCTTTGTCCAAGGTCTTGGTGAGGATGTGTCCACACAGGAAGTCAGTGATTACTTCAAACAGATTGGAATCATTAAGGTAAATAAGAAGACTGGCAAACCCATGATCAATCTGTACACAGACAAAGCCACTGGCAGACTGAAGGGAGAAGCCACAGTTTCCTTTGATGACCCTCCTTCTGCCAAAGCTGCCATTGATTGGTTTGATGGCAAGGAGTTTAATGGTAAGCCCATTAAGGTCTCGTTTGCCACCAGAAGGGCTGAGTTCActcagagaggaggaggaggaggaggaggggggggagGCAGAGGGCGTGGAGGATTCAGAGGAAGAGGAGGCTTTGGTGGGGGTGGAGGTGGTCCAAATTTTGATGTGAAGGGAGGAGACTGGCCCTGCCCAAACAGCTCTTGTGGAAACATGAACTTTGCACGAAGATATGAATGCAACAAATGTGGTGCACCAAAACCAGGAGACAGCTTTGGAGACCGTGGTGGTGGATACAAGATGGGAGGAAGAGGGGAGCACAGAGAAGACAGACGAGACCGGCCATACTAAAGGATCTGAGCAAAGATGCAACCAAGAATCTGAACTGGGGCTGGGGAGGGTTAACATTAGGCTAAATGAAGGGATGGGATTGTTCCATTTTCCGGTCTTCATACTTTTTCTAGCAGTTTCTGCTGTATCAAGTGACACTCTGCTCGGAAGCATCAATGTGAATCTACTGTTTGAGGCTGAATGGATGAGGGGAGATGAAACATGAGGGGGGTGGGCGAGAGGtgattatttttgttactcCCTTTTTAATTTCCCTGACTAGTGGAATTTGCATTTAATGTGTTAGACTCGTCAGACTTCATATCATTGTTTTGTAAGATTGAATTGAACTGTTTTACTTGGGTTTTTCTTTTGCAAATGATATTAAACATTGTTCTGATCTTAA

Function

symbol description
taf15 Predicted to enable RNA binding activity and transcription coregulator activity. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in chondrosarcoma and extraskeletal myxoid chondrosarcoma. Orthologous to human TAF15 (TATA-box binding protein associated factor 15).

NR:

description
PREDICTED: TATA-binding protein-associated factor 2N isoform X4

GO: NA

KEGG:

id description
K14651 TAF15, NPL3; transcription initiation factor TFIID subunit 15

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678755.1 True 1822 mRNA 0.50 16 5262342 5273102
XM_022678756.1 False 1820 mRNA 0.50 16 5262341 5273102
XM_022678757.1 False 1742 mRNA 0.49 16 5262341 5273102

Neighbor

gene id symbol gene type direction distance location
LOC111194493 NA coding upstream 41207 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 45255 5215285 ~ 5217086 (+)
LOC103032228 NA coding upstream 50566 5210309 ~ 5211775 (+)
LOC111194492 NA coding upstream 55282 5204293 ~ 5207059 (+)
LOC111194610 NA coding upstream 58341 5201640 ~ 5204000 (+)
mmp28 mmp28 coding downstream 813 5273915 ~ 5304919 (+)
LOC103043150 LOC108424020,LOC108280635 coding downstream 60769 5333871 ~ 5344070 (+)
rsrc1 rsrc1,LOC108424082 coding downstream 418733 5691835 ~ 5912829 (+)
mlf1 NA coding downstream 642497 5915599 ~ 5932823 (+)
gfm1 gfm1 coding downstream 662086 5935188 ~ 5949403 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 36001 5223649 ~ 5226340 (+)
G149574 NA non-coding upstream 224547 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 328107 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 329504 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 352510 4907417 ~ 4909831 (+)
G149635 NA non-coding downstream 71742 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 99907 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 152790 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 513823 5786925 ~ 5816467 (+)
G149760 NA non-coding downstream 676749 5949851 ~ 5950341 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 3480 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 62356 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 147625 5111324 ~ 5114716 (+)
G149595 NA other upstream 159983 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 497496 4684608 ~ 4764845 (+)
G149754 NA other downstream 452167 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1309944 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1662239 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1976063 7249165 ~ 7251366 (+)
G150099 NA other downstream 2496582 7769684 ~ 7805254 (+)

Expression


Co-expression Network