rsrc1 (rsrc1,LOC108424082)


Basic Information

Item Value
gene id rsrc1
gene name rsrc1,LOC108424082
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5691835 ~ 5912829 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678771.1
CCAATCGTTGTGCTCTTTATGGACGATGAATGCCTGTGTGTGGCTGCATGGCGCCGCTGTTTGAGTTCAGTGAAgctgtttctgtttgtgtgaGGAAGCATTTCTGACACGTTTTATCCGTGGCTGAATAAACATGGGTCGTCGTTCTTCAGACAGCGAGGATGACAGCCGCAGTCGGCGGAAGAAGAAGCACAGACGccgctcttcttcttcttcctccagcTCATCAGGCAGCAGAGTGACGAGCCGCAGCAAACATTCCAGCAGGAGAAGTTCCCGGGACAGAGACAAGGACCGGGACCGGGACCGCGACAGGGACAAAGATCGAGACCGTGATCGAGACAGAGAACGAGATCGAGACCGTGATCGTGATCGTGATAGAAGGCGAAGGCACCGTTccagcagcagctcctccagaggcTCCAGTCACAGGAGGCGGAGCCGCAGCACTGACAAAGGGCGGGGCCACAGGTCACGGAGGTCTCGCTCCCGCAGCCGTAAGAGgtctcGCTCCCGCCACCGCAGATCCCGCAGTCGCAGCAGTGGCAGATCCAGCAGGAGGCGCAGCCGCAGTCGGAGCAAAGGCAGAGACCGTAGCCAGCGCAAGACCCGGGAGAAAGATAGAGAACGAGACcgggacagagacagagacagagggcGGGACAAAGAGCGCGAGAGGGAGAGCGATGCAAAAGccaaagagaaggaaaaacaaGGGGACGTGGGGAACATCAAAGCCGGATTAGAACATCTGACACCGGCTGAGCAGGCCAAGGTGAGACTCCAGATGGTGCTTCAGGCTGCAGCTAAAACAGATGAGATCCTGAAAGCCAAGGAAAAGAAGGAAGAGGAAGCAAAGAAGATGAAAGAGGAAGagGAGGCCTCTCTCGCCGAGCAGGTGAGGCGGATAAAGGAGATCGAGGCCATCGAGAGCGACTCCTTTGTTCCTCAGGCTTTCAAATCATCCCGGGATGCCACCAAGGAAACTGAAAATGTGGAGATAAAAAAAGAGGCGGACTCCGATGCTACAGATAAAGATGAGGTCATCTCACTGCCCATCGGAATCAAATACAACGACAGTGATACACTCGCTCATCACAGTTTGTTCATAGACAAAGAAGAAGCAGAGAAGCTGTGGCTGAATCGACTGCTGTCTCTGCGTCAGGAGAGGCTGATGGGGAGTCCAGTTTCCTGACCACACCTTTCTAACCAGCATCTCGGACACattcaacttatttttttttatactcagtAGACCCACATGCCTGTTGGAAATAGAAGAATAATTTGAAGGCTTTTTaaactttagattttttatttttggatgtATAGTATAGTTGCAACGACAGTATGTCAAACTAATGCTGCAAAATTATAGGAATCTGAAAGAATGTGACAACCACTGGAATGTGACTTTTAAAGTGAGGTGTTTTCAGTAAATTCTGATCAATGTAACAgatcaaaatattatgaccccatctttttttttttttttttatactcatTGTCCATTTGATcggctccactgagcatataggagcATTGTGTAATTCTATAATAACAGACTCAGGACCACAGAGgaccaccacaccacacacttctgAGGTTTTTTAATTCTCCACCCTTACtagtacaacacacacactaacacatcaCCATCATGCCACTgcgtgtcactgcagtgctgagaataacccaccacccaaataatagctgctctgtgtggGTTTATCATGTGGGGTCCTGATAATTGAAAAAGacggtgaaaggaggataataataaagtatgcaaagaaacaatgtctacagtctgtatttattatagtaTTACTACATTTAAATTATCTGTATTACtacaaagtgaaaaaaaaaaacggaaaatgAGTGTGGAAACAAGCAGATGATCATAATACTGTGATATGACGATGTATTCACATTTGTATTAATGTTTTGATGATTGATTAAAGGCAAAAAAAGATCCACTTCA

Function

symbol description
rsrc1 Predicted to be involved in alternative mRNA splicing, via spliceosome. Predicted to act upstream of or within mRNA splicing, via spliceosome. Predicted to be active in cytoplasm and nucleus. Human ortholog(s) of this gene implicated in autosomal recessive non-syndromic intellectual disability. Orthologous to human RSRC1 (arginine and serine rich coiled-coil 1).

NR:

description
serine/Arginine-related protein 53

GO: NA

KEGG:

id description
K24594 RSRC1; arginine/serine-rich coiled-coil protein 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678771.1 True 1987 mRNA 0.47 10 5691835 5912829

Neighbor

gene id symbol gene type direction distance location
LOC103043150 LOC108424020,LOC108280635 coding upstream 347765 5333871 ~ 5344070 (+)
mmp28 mmp28 coding upstream 386916 5273915 ~ 5304919 (+)
LOC111194496 taf15,LOC107103138 coding upstream 418733 5262341 ~ 5273102 (+)
LOC111194493 NA coding upstream 470701 5217173 ~ 5221134 (+)
LOC103032540 cldnj,LOC108424024,LOC108280332,LOC107749063,LOC107680085,LOC107551261,LOC107703975 coding upstream 474749 5215285 ~ 5217086 (+)
mlf1 NA coding downstream 2770 5915599 ~ 5932823 (+)
gfm1 gfm1 coding downstream 22359 5935188 ~ 5949403 (+)
LOC111194497 NA coding downstream 51947 5964776 ~ 5965375 (+)
mfsd1 mfsd1,LOC106580941 coding downstream 69581 5982410 ~ 6002460 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding downstream 93037 6005866 ~ 6500956 (+)
G149652 NA non-coding upstream 183782 5425892 ~ 5508053 (+)
G149644 NA non-coding upstream 316575 5373009 ~ 5375260 (+)
G149635 NA non-coding upstream 346401 5344844 ~ 5345434 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 465495 5223649 ~ 5226340 (+)
G149574 NA non-coding upstream 654041 4962090 ~ 5037794 (+)
G149760 NA non-coding downstream 37022 5949851 ~ 5950341 (+)
G149766 NA non-coding downstream 41576 5954405 ~ 5959940 (+)
G149768 NA non-coding downstream 53331 5966160 ~ 5966431 (+)
LOC111194498 NA non-coding downstream 56804 5969633 ~ 5973852 (+)
G149800 NA non-coding downstream 550272 6463101 ~ 6464880 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 432974 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 491850 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 577119 5111324 ~ 5114716 (+)
G149595 NA other upstream 589477 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 926990 4684608 ~ 4764845 (+)
c17h3orf80 NA other downstream 670217 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1022512 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1336336 7249165 ~ 7251366 (+)
G150099 NA other downstream 1856855 7769684 ~ 7805254 (+)
G150131 NA other downstream 1961811 7874640 ~ 7879301 (+)

Expression


Co-expression Network