gfm1 (gfm1)


Basic Information

Item Value
gene id gfm1
gene name gfm1
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5935188 ~ 5949403 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678774.1
TGTGGCGGGGGGCGGATGTCAGCGCAGCACCGGCGTGACTTTGAGCCGGTCAGCTGGTggaagtgtgtgaagtgtgcGGGTTCATCCTCTCCGTGTCTTCAAGTTGCCGAAATGCGGTTACTGACAGCAGCGCTGGCCCTGAGCCGGAGCAACCTATCCAAACCGGTTAATGTCGTGGTCAGCAGCTGCAGGGCCTGTTCCTCCGGGATCACCCCGAACGAGCGGATCCGCAACATCGGGATCTCCGCGCACATCGACTCGGGGAAAACCACGCTGACCGAGCGGGTCCTCTACTACACCGGCCGCATCGCCGAGATGCACGAGGTCAGGGGTAAGGATGGAGTCGGGGCCGTCATGGACTCTATGGAgctggagagacagagaggaatcACCATCCAGTCAGCTGCTACGTTCACCATGTGGAAAGACCACAACATCAACATCATAGACACACCAGGTCACGTGGACTTCACCATTGAGGTGGAGAGGTCTCTGCGGGTgctggatggagctgtgctggtgcTGTGTGCTGTAGGAGGGGTGCAGTGTCAGACCATGACTGTGAACAGACAGATGAAGCGCTACAATGTGCCTTTCCTCACCTTCATCAACAAGCTGGACCGCGCTGGAGCTAACCCCTACAGAGCAGTGCAGCAGCTCAGGACGAAACTGAATCATAATTCAGCATTTGTGAACATCCCCATCGGACTGGAGGGAAACCTGCAGGGCATCATTGACCTCATTGAGGAACGCAGTATCTATTTTGAAGGTCCTTGTGGtcAGAGCATTCGCTATGATGAAATCCCGGCAGAGATGCGAGCGGAGGCGGCCGAGCGCAGGCAGGAGCTGGTGGAGTGTGTGGCCAATGCTGATGAAACACTGGGGGAGATATTTCTGGAAGAGAGGGTGCCCACTGTGGATGACCTGAAGGCTGCTGTACGCAGAACGACCATCCAGCGCTCCTTCTCTCCAGTGCTGGTTGGCAGTGCTCTGAAAAATAAAGGTGTTCAGCCTCTGCTGGACGCTGTGCTGGACTACCTGCCCAACCCTACTGAGGTCAACAACTACGCCCTCCTTAATGAAGAGGAGTCAAGTGACAGCACTAAGATTCTGATGGATCCAACAAGAGATGACTCAAAGCCGTACGTGGGGTTGGCCTTTAAATTAGAGGCTGGACGCTTTGGTCAGCTGACCTACGTAAGGGTGTACCAGGGCTGCTTGAAGAAAGGGGAGTACATTTACAACACACGCACTGGCAAGAAGGTGCGTGTCCAGAGGCTGGTGCGCCTCCACGCAGACCAGATGGAGGATGTGGAAGAGGTATATGCAGGAGATATCTGTGCCCTGTTTGGAATCGACTGTGCCAGCGGAGACACCTTCACAGCTCGTACAAGCTCCAACCTCTCCATGGAGTCTATCCATGTTCCTGAACCAGTCATCTCCATGGCTATGAAACCAGCCAATAAGATCGACACAGATAAGTTCTCTAAAGGAATCGCCCGCTTCACAAGAGAGGACCCCACTTTCAGAGTGCACTACGACAATGAGAGCAAGGAGACGGTTATCTCAGGCATGGGGGAGCTACATCTGGAGATTTACTCACAGAGGATGGAACGGGAGTATAACTGCCCTTGTGTTATGGGGAAACCTAAAGTGGCCTTCAGGGAGACTGTGACTGGCCCTGTTCCATTTGATTTCACCCACAAGAAGCAGTCTGGGGGATCGGGGCAATATGGTAAAGTAATAGGAGTCCTGGAACCCCTGGACCCTGAGCAATACACCAAGGTTGAGTTTGAAGACCGAACAGTAGGCACCAACGTGCCCAAACAGTTTGTGCCAGCTGTGGAGAAGGGTTTCACTGATGCCTGTGAGAAGGGACCTCTAACGGGTCATAAGATATCTGGTGTGCGCTTCGTACTGGAGGATGGAGCAAATCACATGGTGGACTCCAACGAAATCTCCTTCATCCGAGCAGGAGAGGGCGCTATGAAACAAGctaTGGAGAATGCTAATGCAGTCATTCTGGAGCCAATCATGTCAGTGGAAATTGTGGCTCCTGAAGAATTCCAGGGGATGATCATTGCGGGAGTGAACCGCCGGCACGGTGTCATCACAGGGCAGGATGGGGCGGAGGGATACTTCACACTGTATGCTGATATTCCTCTTAACAACATGTTTGGGTATTCAACAGAGCTGCGCTCCTGCACTGAGGGGAAAGGAGAGTACACCATGGACTACAGCAGATATCAGCCCTGCCTGCCCTCTGTCCAAGAGGAGCTTATTAATAAATACCTGGAGGCAACAGGCCAGCTGCCTGCAAAGAAGAGCAAATGGAAGAACTGATCAACAtgtatacataaacacacacacacacacacacacatattcaacCCTCATCTGTCAGAAATTggtcattaaaataatttatgtatatttttaagctCTCACTGCTGAGTGGAGCTCAAAGGACAGCTTTGGGCATGTACAGTGGTGGTTTTGTACTATGTACAGCATAAATATTGTGtctaaatgataaaatgtcTATTAATCttgtatctgtgtgttttaaatttatttcaattca

Function

symbol description
gfm1 Predicted to enable GTPase activity and translation elongation factor activity. Predicted to be involved in mitochondrial translational elongation. Predicted to act upstream of or within translational elongation. Predicted to be active in mitochondrion. Human ortholog(s) of this gene implicated in combined oxidative phosphorylation deficiency 1. Orthologous to human GFM1 (G elongation factor mitochondrial 1).

NR:

description
elongation factor G, mitochondrial

GO:

id name namespace
GO:0006414 translational elongation biological_process
GO:0006184 obsolete GTP catabolic process biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0003924 GTPase activity molecular_function
GO:0005525 GTP binding molecular_function
GO:0003746 translation elongation factor activity molecular_function

KEGG:

id description
K02355 fusA, GFM, EFG; elongation factor G

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678774.1 True 2584 mRNA 0.52 18 5935188 5949403

Neighbor

gene id symbol gene type direction distance location
mlf1 NA coding upstream 2365 5915599 ~ 5932823 (+)
rsrc1 rsrc1,LOC108424082 coding upstream 22359 5691835 ~ 5912829 (+)
LOC103043150 LOC108424020,LOC108280635 coding upstream 591118 5333871 ~ 5344070 (+)
mmp28 mmp28 coding upstream 630269 5273915 ~ 5304919 (+)
LOC111194496 taf15,LOC107103138 coding upstream 662086 5262341 ~ 5273102 (+)
LOC111194497 NA coding downstream 15373 5964776 ~ 5965375 (+)
mfsd1 mfsd1,LOC106580941 coding downstream 33007 5982410 ~ 6002460 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding downstream 56463 6005866 ~ 6500956 (+)
LOC103025849 NA coding downstream 554750 6504153 ~ 6520788 (+)
trnat-agu_4 NA coding downstream 597301 6546704 ~ 6546777 (+)
G149757 NA non-coding upstream 118721 5786925 ~ 5816467 (+)
G149652 NA non-coding upstream 427135 5425892 ~ 5508053 (+)
G149644 NA non-coding upstream 559928 5373009 ~ 5375260 (+)
G149635 NA non-coding upstream 589754 5344844 ~ 5345434 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding upstream 708848 5223649 ~ 5226340 (+)
G149760 NA non-coding downstream 448 5949851 ~ 5950341 (+)
G149766 NA non-coding downstream 5002 5954405 ~ 5959940 (+)
G149768 NA non-coding downstream 16757 5966160 ~ 5966431 (+)
LOC111194498 NA non-coding downstream 20230 5969633 ~ 5973852 (+)
G149800 NA non-coding downstream 513698 6463101 ~ 6464880 (+)
G149754 NA other upstream 207768 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 676327 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 735203 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 820472 5111324 ~ 5114716 (+)
G149595 NA other upstream 832830 5090982 ~ 5102358 (+)
c17h3orf80 NA other downstream 633643 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 985938 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1299762 7249165 ~ 7251366 (+)
G150099 NA other downstream 1820281 7769684 ~ 7805254 (+)
G150131 NA other downstream 1925237 7874640 ~ 7879301 (+)

Expression


Co-expression Network