LOC111194497


Basic Information

Item Value
gene id LOC111194497
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5964776 ~ 5965375 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678776.1
TCTTTCTTAAAGCTTTTctgaattcgttttttttccgTTATGATCAACAGGAAGCCAGGTATGCGCCGGTCGCTGTCGACGTCCAGCAGGGATGAAATTATTCGCTGGTTTAAAGAGAAGCAGACCTTCAGAGTTTGTTTACAGCAAGGCGAGAGTCGAGTTGCCCCCTGGTTTCATGGTATTATTACTCGTGAGGAGGCGGAGGATTTGCTGAAGTCAGGCAGCGCTGGAAGCTTCCTGGTCCGTGTTAGCGAGAGGATCTTTGGATATGTTCTTTCTTACAGAACATAgtctatgactcctgcaagtttgggcaaatttcactgtattgtttattttatattaattgttttttttattcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678776.1 True 363 mRNA 0.42 2 5964776 5965375

Neighbor

gene id symbol gene type direction distance location
gfm1 gfm1 coding upstream 15373 5935188 ~ 5949403 (+)
mlf1 NA coding upstream 31953 5915599 ~ 5932823 (+)
rsrc1 rsrc1,LOC108424082 coding upstream 51947 5691835 ~ 5912829 (+)
LOC103043150 LOC108424020,LOC108280635 coding upstream 620706 5333871 ~ 5344070 (+)
mmp28 mmp28 coding upstream 659857 5273915 ~ 5304919 (+)
mfsd1 mfsd1,LOC106580941 coding downstream 17035 5982410 ~ 6002460 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding downstream 40491 6005866 ~ 6500956 (+)
LOC103025849 NA coding downstream 538778 6504153 ~ 6520788 (+)
trnat-agu_4 NA coding downstream 581329 6546704 ~ 6546777 (+)
trnat-agu_5 NA coding downstream 581572 6546947 ~ 6547020 (+)
G149766 NA non-coding upstream 4836 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 14435 5949851 ~ 5950341 (+)
G149757 NA non-coding upstream 148309 5786925 ~ 5816467 (+)
G149652 NA non-coding upstream 456723 5425892 ~ 5508053 (+)
G149644 NA non-coding upstream 589516 5373009 ~ 5375260 (+)
G149768 NA non-coding downstream 785 5966160 ~ 5966431 (+)
LOC111194498 NA non-coding downstream 4258 5969633 ~ 5973852 (+)
G149800 NA non-coding downstream 497726 6463101 ~ 6464880 (+)
G149934 NA non-coding downstream 776151 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 787643 6753018 ~ 6763106 (+)
G149754 NA other upstream 237356 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 705915 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 764791 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 850060 5111324 ~ 5114716 (+)
G149595 NA other upstream 862418 5090982 ~ 5102358 (+)
c17h3orf80 NA other downstream 617671 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 969966 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1283790 7249165 ~ 7251366 (+)
G150099 NA other downstream 1804309 7769684 ~ 7805254 (+)
G150131 NA other downstream 1909265 7874640 ~ 7879301 (+)

Expression


Co-expression Network