mfsd1 (mfsd1,LOC106580941)


Basic Information

Item Value
gene id mfsd1
gene name mfsd1,LOC106580941
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5982410 ~ 6002460 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678777.1
CTCCTGAGTGTGCAGTCACATGACTCAGGATCCGCACGGCTCTGCTGTAGAGCTGCTGTATGAGAGAGCTGCTGTTTTAACATAGGGAGGAGAATGGCGGGATTAGAAGAAGACGAGAGGCTTTTAGATGAAAATAATCATGAGGGGAGAAACACAAGGCGGATGCATCCTCTGCTGGACCCGAGCCACCTGCTGCACCGGATCTGGGTCCTgatgtttatgtgttttttaggtTTCGGTAGCTACTTCTGCTATGACAATCCAGCAGCTCTTCAGAAACAAGTCATACAGGATATGGGACTAAACACCTCCAGCTTTATGCAGCTTTATGCCTGGTACTCATGGCCCAATGTAGTCCTCTGTTTTCTGGGAGGCTTTCTACTGGACAGAGTTTTTGGCATCAGGCTGGGGACAATAATCTTTTCACTCTTTGTCTGTGTTGGACAGgttATATTTGCTTTAGGTGCATTGGTCAACCATTTCTGGCTAATGAACATGGGCCGTTTTGTTTTTGGGATCGGTGGAGAGTCACTAGCTGTTGCACAGAACACATATGCAGTGAACTGGTTCAAAGGGAAGGAGCTGAACCTGGTGTTTGGCCTGCAACTCAGCATGGCTAGAGTGGGCAGTACAGTCAACATGAACAGTATGGGTGCTGTATACGATTCCATGAAGACTGCTTTGGGCCAGACAGGCCACTTCACATTAGGGGCTGCACTTATGATCGcCGGCTCGACGTGTGTGTTCTCGCTGCTGTGTGCACTGATTTTGGGCTACCTTGACAGGCGAGCAGAGAGGATCCTCAAAAAAGAGCAAGGAAAGACTGggGAAGTTATCAGGCTGACGGATGTGAAGGACTTCCCTCTCCAGCTATGGCTAATTTTCATCATCTGTGTTGGATACTACGTTGCCATCTTTCCCTTTATTGGCCTGGGGCAGGTCttcttcattgaaaagttcaACTTCACCCCAACCCAGGCAAGAGCAGTCAACAgcaTTGTGTACATCATGTCTGCTCCTGCCTCGCCATTACTGGGTTTGATGGTGGATAAAACTGGCAAGAACATTATTTGGGTTCTGGTTGCTGTCGTCACCACACTGATCTCTCACATGATGCTGGCTTTCACCTTCTGGAACCCCTGGATTGCTATGGTTATCTTGGGTCTGTCCTATTCGCTGCTGGCCTGTGCTCTCTGGCCAATGGTGGCTTTTGTAGTGCCAGAGCACCAGCTGGGCACAGCATATGGATTTATGCAGTCCATCCAGAATCTGGGATTGGCACTAATTTCCATGGCAGCTGGAGCCATTCTTGACAGCAAAGGTTATCTGCTGTTGGAGGTCTTCTTCTGTGCTTGCATATGCTTGGCTCTGATAGCAGTGGTGGTGCTGTACTTTGTGGACTATCTACGCTGTGGAGAGCTGAATCTTTCTGCGGCAGCCCGGGCCAGATTACAGAAGACCAACTCTTCTGAGTCAGAgctggcACGGCAGATGCGTAAGCGCTCTCAGGAGGAGTTAACTCGTCTGAAGCACTTGTCTCCTTTTGGCATTCGCAATCGCTATCTCTCCAGACTGGGAGCACAGCTTCCAGACAACTACAGCATCCACCTGTCCTCCCTGGCGTATAGAAGTCTGCTCCGATGACCTCCATGATGCTTTAAACtctgtatttaatgtttaaaaactaatttaaacatgTGGTAGATGAAAAAGGGGAAATTAAAGACTTTGAGACTGTTTAGTTGGTTTCAGCTTCACAAGATAAGTAGATGTAGAATGTGGTAAAATGTTTAGCACTCACAATGTTCAGATATTTGAAAATTCAGGTTTCTTTCACTGTATTTGGTGATTTATATGCTTAAACACTTGCACTTTATTCTGGAAAACAGGAATTGAATGTATTGTATGCTTTACAGTtctcattgatttttttttttttaattgcagattCTTGAAGGTTTAAATTTCAAACTAAAGTTTC
>XM_022678778.1
TCCTGAGTGTGCAGTCACATGACTCAGGATCCGCACGGCTCTGCTGTAGAGCTGCTGTATGAGAGAGCTGCTGTTTTAACATAGGGAGGAGAATGGCGGGATTAGAAGAAGACGAGAGGCTTTTAGATGAAAATAATCATGAGGGGAGAAACACAAGGCGGATGCATCCTCTGCTGGACCCGAGCCACCTGCTGCACCGGATCTGGGTCCTgatgtttatgtgttttttaggtTTCGGTAGCTACTTCTGCTATGACAATCCAGCAGCTCTTCAGAAACAAGTCATACAGGATATGGGACTAAACACCTCCAGCTTTATGCAGCTTTATGCCTGGTACTCATGGCCCAATGTAGTCCTCTGTTTTCTGGGAGGCTTTCTACTGGACAGAGTTTTTGGCATCAGGCTGGGGACAATAATCTTTTCACTCTTTGTCTGTGTTGGACAGgttATATTTGCTTTAGGTGCATTGGTCAACCATTTCTGGCTAATGAACATGGGCCGTTTTGTTTTTGGGATCGGTGGAGAGTCACTAGCTGTTGCACAGAACACATATGCAGTGAACTGGTTCAAAGGGAAGGAGCTGAACCTGGTGTTTGGCCTGCAACTCAGCATGGCTAGAGTGGGCAGTACAGTCAACATGAACAGTATGGGTGCTGTATACGATTCCATGAAGACTGCTTTGGGCCAGACAGGCCACTTCACATTAGGGGCTGCACTTATGATCGcCGGCTCGACGTGTGTGTTCTCGCTGCTGTGTGCACTGATTTTGGGCTACCTTGACAGGCGAGCAGAGAGGATCCTCAAAAAAGAGCAAGGAAAGACTGggGAAGTTATCAGGCTGACGGATGTGAAGGACTTCCCTCTCCAGCTATGGCTAATTTTCATCATCTGTGTTGGATACTACGTTGCCATCTTTCCCTTTATTGGCCTGGGGCAGGTCttcttcattgaaaagttcaACTTCACCCCAACCCAGGCAAGAGCAGTCAACAgcaTTGTGTACATCATGTCTGCTCCTGCCTCGCCATTACTGGGTTTGATGGTGGATAAAACTGGCAAGAACATTATTTGGGTTCTGGTTGCTGTCGTCACCACACTGATCTCTCACATGATGCTGGCTTTCACCTTCTGGAACCCCTGGATTGCTATGGTTATCTTGGGTCTGTCCTATTCGCTGCTGGCCTGTGCTCTCTGGCCAATGGTGGCTTTTGTAGTGCCAGAGCACCAGCTGGGCACAGCATATGGATTTATGCAGTCCATCCAGAATCTGGGATTGGCACTAATTTCCATGGCAGCTGGAGCCATTCTTGACAGCAAAGGTTATCTGCTGTTGGAGGTCTTCTTCTGTGCTTGCATATGCTTGGCTCTGATAGCAGTGGTGGTGCTGTACTTTGTGGACTATCTACGCTGTGGAGAGCTGAATCTTTCTGCGGCAGCCCGGGCCAGATTACAGAAGACCAACTCTTCTGAGTCAGAGTAAAGGCTGTTCAGTCTGCTGGCTCTACTCAGTCTAGCCTGCTGTGAGCCCTTTCACTGGACAACCTGACCTGTCAATCACCCACTTGGTGGGAGGGGACCTACCTTTCTGCACAGCTGACTCCTTCTCACTACACTGGCCACTACTTCCTCTAACTGCACTTCCACTTCCAGGCTTCCCAAtgacacagcagtgctattgCTCATCAGCTGCCTCTTCTGTTCAAAATGAACTTTTAATGGACTTCTCCAGCTGTGGTAATGACAGGGAAAGGAGGGGTACGGTAGGTAGGCTGAGGAGACGAGGCTGCTGTGGCTTTGGCTCCACCTGCAGGCCTCCCCTTAGGCTTACCTGGGGACAGGACTGACCTTTCAATAGTGCTGAAGTGTTCTGGGCTGGCTGGGAAGAGCAGTGGATGATATCCTGTCACTCTCTCAATACTGCCTCAGGGTAGCTGGCCATCAGCTGTTGACACTGAACACACATCGCTTCTTATTCCTCCAGCAAGTCAAGTGGGGCCACTTCTTTCCTATGTACTCTCACACTGGTGATATCTTTCCTCATTGGACAGCTCTTCTACAGCCTTTAACTGGAGTCTGTGATGTGTGTTTTCTATGTTGTAACTGATCAGGTCAGGTCACTGATCAGTTTTGTTTTAACacctaaaatacattaatgttaaaaaaaaaaatagttgcacccagaaagaATCAACAGGCAGAAAGGTAACTTGGTGGTGACACTGAATGGCATTTTTCCTGCAGGTTATgcgtcatggtgtggggtgcaatttttaaaacaataccatCATTTTTGGTCTTTCTTACACTTTTACAAAATGAgttcctgcaaccagtggcccttgatttttttattttttttaaatgcacactTCAGAGCTCTATTCCAACGGGACAATGTTTgtccacatgctgctgctgctgatttaaGAGATTTTAAGAGCTTTCCTTAAAGACACTGACTCTATGCCATGGTCTGCCTTTCAAATAGCAGTCTATTATGACAtatccttctgggtgcaaccatttttgcaaccattttattaataataagtgTACTATAATGGTTCTGTGGCTCTGAGAGAAGCATTTTTATTACCGTGCGTTCTATCCAAAAGCACTCTAGCCTGATGCCTTagcttttttacacttttcatttttaatgaattcTAACAGGAAATttgtttgtaattattattatttttttttacttttaatattttttttaatgtaatgttttatatctGATTAGCACCTCTAGAGCACTGACATTAACATTTTTGAAACGGGTTTTACTTGTAATTATTGTCAGTTAATTTTAATGAGTGCATTGAAGTGATTCATCATGTAATATGATATCAGACATTTTGGACATGTATAGAAGTgccaaacagtttttttttttatttccttaccACAAAAAATCAAATGAAGGTGATTGATCATTTTAACCAGATGCATGATATCAGCCAAGACCAGTTATGTATCTGGTTTCTGCTTCTTAATTTGATCTTCAGACTATTTATTGGTTATTAACAttttagcctagcatctcctgTTGGCAGAGCAATTGTATTTGGCTGTCAGTGATATCAAAATAGTCAAAATATTGTATCAAACTAGTCCTTCTAATATTCCTTTCTATAACcaatgactgtaaaaaaaaatgtggacaGTGTTGTTCCATTCGCTTCTATTCTATGAAAATGAAGGCAAATTTACCTTTATAAATTTGCTTTATTGTCAGATTTGCAGCTAGAATCTTCACACCAGAGGTTGAGCCAGATTTACCTACTTATCTGGTGGACCCGGATAGACTCTTTTAGGCCCTCCCCCTTCTTCCAGATCCTTCTCCTTTTTCCAGTgtatctcagactgccttcattgagcttGCAGTACAGAGTTCCACTATAATTTTGCTACTCCAAGTAATGAAGGGACAGAATGTGATGCAGGTTCATCAGATGACTGATCTTTTTCAGCTGAGGCTAAATTCCCCGCCTTCATTTAAAATACATGATTTATTTTGGAAAAGAGTAAAATGTGCCAATATTAGCACAGGGAAAACTAATCACTGAAATTAGATTTagacactgaaaaaaaacatttagaagaGAAAAATCAGAAGAATCGTGGAAACAGAAGCAATAAACCAGTagttctttcatttttaataga

Function

symbol description
mfsd1 Predicted to enable protein homodimerization activity. Predicted to be involved in protein localization to lysosome and protein stabilization. Predicted to act upstream of or within transmembrane transport. Predicted to be located in lysosome. Orthologous to human MFSD1 (major facilitator superfamily domain containing 1).

NR:

description
major facilitator superfamily domain-containing protein 1-like isoform X1

GO:

id name namespace
GO:0055085 transmembrane transport biological_process
GO:0016021 integral component of membrane cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678777.1 False 1981 mRNA 0.46 17 5982410 6002460
XM_022678778.1 True 3676 mRNA 0.43 16 5982411 5997844

Neighbor

gene id symbol gene type direction distance location
LOC111194497 NA coding upstream 17035 5964776 ~ 5965375 (+)
gfm1 gfm1 coding upstream 33007 5935188 ~ 5949403 (+)
mlf1 NA coding upstream 49587 5915599 ~ 5932823 (+)
rsrc1 rsrc1,LOC108424082 coding upstream 69581 5691835 ~ 5912829 (+)
LOC103043150 LOC108424020,LOC108280635 coding upstream 638340 5333871 ~ 5344070 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding downstream 3406 6005866 ~ 6500956 (+)
LOC103025849 NA coding downstream 501693 6504153 ~ 6520788 (+)
trnat-agu_4 NA coding downstream 544244 6546704 ~ 6546777 (+)
trnat-agu_5 NA coding downstream 544487 6546947 ~ 6547020 (+)
trnat-agu_6 NA coding downstream 544894 6547354 ~ 6547427 (+)
LOC111194498 NA non-coding upstream 8558 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 15979 5966160 ~ 5966431 (+)
G149766 NA non-coding upstream 22470 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 32069 5949851 ~ 5950341 (+)
G149757 NA non-coding upstream 165943 5786925 ~ 5816467 (+)
G149800 NA non-coding downstream 460641 6463101 ~ 6464880 (+)
G149934 NA non-coding downstream 739066 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 750558 6753018 ~ 6763106 (+)
G149944 NA non-coding downstream 767504 6769964 ~ 6827772 (+)
G149952 NA non-coding downstream 802019 6804479 ~ 6807042 (+)
G149754 NA other upstream 254990 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 723549 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 782425 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 867694 5111324 ~ 5114716 (+)
G149595 NA other upstream 880052 5090982 ~ 5102358 (+)
c17h3orf80 NA other downstream 580586 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 932881 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 1246705 7249165 ~ 7251366 (+)
G150099 NA other downstream 1767224 7769684 ~ 7805254 (+)
G150131 NA other downstream 1872180 7874640 ~ 7879301 (+)

Expression


Co-expression Network