LOC111194502


Basic Information

Item Value
gene id LOC111194502
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6935130 ~ 6938983 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678793.1
ACACATACTTTGTTCTTCTCCCTAATTTTAGTATTTACGTTAGGTTTTTAACCTAGCCTTAGGTACTTAACgatagttaactaggttagccaACTCAGGTTAGCTAAGTAAAGTAACTAAACTTGTTTGGTGAAAATTACGTGGAGTGGGCGGGGTTTGAGCAGTCACACGGCCCCGCCCCCCGCCTCCCACCTCTGTCACGCCAGTTCTGGCTCTAATTTGCCTCTACTGCCTCTGCAAGCGCAGGCAAGATGGCAGCTTCCATTTCGGCCATATTTTGGCTTTAAAACGCCTTAATGAGAGTAAATGGGGACCGTCCAGTCCATACTTTTATACAGTCTATAATCACAACCCAAACTCCACAACGCGCCAAGCAGCACATTTTTAGTTGCTGCGGAAGCACAGCTCATTtaggctcagctcagctcacctCAGGACTTGTTGTGCTACTAAGATATAAGGCAGTGTGAGGTTGGTGGATGGTGGCAGTCGCtgtgctgggagagtggaggttcttcatagTGTGTGGTGATGACTGGGATATGAGTGATGCTGCAGTGGTGTGtagagagctgggctgtggagaAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgGGAGCTGGGCTGTGGAGAAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTcagGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggTGAGAGCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgGGAGCTGGGCTGTGGAGAAGCTGTAGATGCACTGGGCAAATCTCACTTTGGATCAGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGTAAACATAACTGTAATCACTCTACAGATGCTGGAGTTATCTGTTcagGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggTGAGAGCTGGttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678793.1 True 1424 mRNA 0.48 5 6935130 6938983

Neighbor

gene id symbol gene type direction distance location
nmd3 nmd3 coding upstream 29489 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 197096 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 199962 6735095 ~ 6735168 (+)
smc4 smc4,LOC107720450,LOC107570344 coding upstream 209785 6699726 ~ 6725345 (+)
trnat-agu_9 NA coding upstream 385905 6549152 ~ 6549225 (+)
LOC111194503 NA coding downstream 76 6939059 ~ 6941197 (+)
LOC111194504 NA coding downstream 5506 6944489 ~ 6946968 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 578021 7517004 ~ 7540136 (+)
srprb srprb coding downstream 667506 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 681614 7620597 ~ 7627540 (+)
G149960 NA non-coding upstream 41479 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 107358 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 128088 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 172024 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 190105 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 314043 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 334222 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 435030 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 708640 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 715445 7654428 ~ 7659678 (+)
c17h3orf80 NA other upstream 348761 6583046 ~ 6586369 (+)
G149754 NA other upstream 1207710 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1676269 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1735145 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1820414 5111324 ~ 5114716 (+)
LOC111194506 NA other downstream 310182 7249165 ~ 7251366 (+)
G150099 NA other downstream 830701 7769684 ~ 7805254 (+)
G150131 NA other downstream 935657 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1709847 8648830 ~ 8656708 (+)
G150579 NA other downstream 2616676 9555659 ~ 9567097 (+)

Expression


Co-expression Network