LOC111194503


Basic Information

Item Value
gene id LOC111194503
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6939059 ~ 6941197 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678794.1
tggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGATCAGGACCAATCTGGATGGATGATGTGGACTGTAGTGGATCAGAGTTTACACTGAAGAAATGTCAAAGGAGAGGATGGGGAGTCCTGCTGGTTAATGGCTCTCGCTGCTCTGGaagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgggagctgggctgtggttctcctgtggagattctgggagcagctgcttttggtagaggggagggtccggtgtggtcagaggagcttcagtgtagaggaaacgaatcacagattcacttctgtccaaaatcatcttcactcaaacacaactgcTCCCATGATAATGATGTGGGACTGGTGTGTTCTGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtgtgatgctgactttaaccagcaggatgcagaggttgtgtgtcgagagctgggctgtggttctcctgtggagGTTCTGGGAGCAGCTGCTTTTGGTAGAGGGGAGGGTCCGGTGTGGTCAGAGGAGCTTCAGTGTAGAGGAGATGAATCTGAGATTACTCTCTGTCCAATAACCTCTTCACACAAATACAACTGCTCTCATGGTAATGATGTGGGACTGGTGTGTTCTGGTAAGAGCTGCATGTTTGTGATTAATGTCATTAAGATTAGCTCAATGTTTATGTAAACTTTTTGTAATTCTGTCAAAAATGCAAATGTCTTGCTATTATTTCAGTTTTCAGCCACAATTCTACTTTACATCATTTATAGTGgtgaaaatacatgttttttccaTTCTTTCTCAATGTCTTGGTCTGTCTTACTCACTGTTGTACAGGCAGTGTGAGGTTGGTAGATGGTGACAGTCGCtgtgctgggagagtggaggttcttcatggagagagctggttcacagtgtg

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678794.1 True 1096 mRNA 0.47 4 6939059 6941197

Neighbor

gene id symbol gene type direction distance location
LOC111194502 NA coding upstream 76 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 33418 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 201025 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 203891 6735095 ~ 6735168 (+)
smc4 smc4,LOC107720450,LOC107570344 coding upstream 213714 6699726 ~ 6725345 (+)
LOC111194504 NA coding downstream 3292 6944489 ~ 6946968 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 575807 7517004 ~ 7540136 (+)
srprb srprb coding downstream 665292 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 679400 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 880784 7821981 ~ 7837425 (+)
G149960 NA non-coding upstream 45408 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 111287 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 132017 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 175953 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 194034 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 311829 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 332008 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 432816 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 706426 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 713231 7654428 ~ 7659678 (+)
c17h3orf80 NA other upstream 352690 6583046 ~ 6586369 (+)
G149754 NA other upstream 1211639 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1680198 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1739074 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1824343 5111324 ~ 5114716 (+)
LOC111194506 NA other downstream 307968 7249165 ~ 7251366 (+)
G150099 NA other downstream 828487 7769684 ~ 7805254 (+)
G150131 NA other downstream 933443 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1707633 8648830 ~ 8656708 (+)
G150579 NA other downstream 2614462 9555659 ~ 9567097 (+)

Expression


Co-expression Network