LOC111194504


Basic Information

Item Value
gene id LOC111194504
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6944489 ~ 6946968 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678795.1
AAAATGTAGGAAACATGACTCTACTCTGTTTCACTGTCCATCTTCATCCTGGAGTCAGAACAATTGTGATAGAAGCAGTGAGGTGACTCACATTACCTGCTCCGGAGAGAAGAAACAGCTTGCATTTGAAAACCTTCAAAAATTCTTCTTATTTCCAAACCAGGATTACATGCCTATTAGGttgagaggaggagaggaaatcTGTTCTGGGAGGTTGGAGGTGTATCATAATGCTGAGTGGGGGTCTATATGTGCTGATCTGTGGGACATCAGGGATGCTCAGGTGGTCTGCAGGCAGCTGGGTTGTGGGCCGGCGCTGAGTGCTAATAGAAGAGCTGTTGATGGTTCTGGTGGAGGAACTATCTGGATGAACAGAGTGAAGTGTAGAGGGAATGAGATTCACCTGTGGGACTGTCCTCATTCCCTGAAGATCCACACTGGCTGCTCCCACAGTGCTGGAGTCACCTGTGCAGACATATTTGTCACATTACCTTTTTCATCTGAAACAACTACAACTTACACCACAGtaccagcacagctaacagagaaaaagacagtCCCTCCTTCAAAAAATCCATCATCTAATTTTCCATACATCTATCCAGTGTCTCTCCTGGTTCTGGGATCTGTGCTCTTCCTGGCCTTAGTGCTTCTGGTTGTGCTGTTTTATCAGAACAGAGTGCTCAGGAGAGGTAGGGAGATTTAGAGATCATCTAAAATC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678795.1 True 721 mRNA 0.46 5 6944489 6946968

Neighbor

gene id symbol gene type direction distance location
LOC111194503 NA coding upstream 3292 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 5506 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 38848 6894328 ~ 6905641 (+)
trnat-agu_11 NA coding upstream 206455 6737961 ~ 6738034 (+)
trnat-agu_10 NA coding upstream 209321 6735095 ~ 6735168 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding downstream 570036 7517004 ~ 7540136 (+)
srprb srprb coding downstream 659521 7606489 ~ 7611611 (+)
neu4 neu4 coding downstream 673629 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 875013 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 1044526 7991494 ~ 8017086 (+)
G149960 NA non-coding upstream 50838 6893316 ~ 6893651 (+)
G149944 NA non-coding upstream 116717 6769964 ~ 6827772 (+)
G149952 NA non-coding upstream 137447 6804479 ~ 6807042 (+)
G149938 kpna4 non-coding upstream 181383 6753018 ~ 6763106 (+)
G149934 NA non-coding upstream 199464 6741526 ~ 6745025 (+)
LOC111194505 NA non-coding downstream 306058 7253026 ~ 7254591 (+)
G150002 NA non-coding downstream 326237 7273205 ~ 7284336 (+)
G150015 cux1 non-coding downstream 427045 7374013 ~ 7383978 (+)
G150060 NA non-coding downstream 700655 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 707460 7654428 ~ 7659678 (+)
c17h3orf80 NA other upstream 358120 6583046 ~ 6586369 (+)
G149754 NA other upstream 1217069 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1685628 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1744504 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1829773 5111324 ~ 5114716 (+)
LOC111194506 NA other downstream 302197 7249165 ~ 7251366 (+)
G150099 NA other downstream 822716 7769684 ~ 7805254 (+)
G150131 NA other downstream 927672 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1701862 8648830 ~ 8656708 (+)
G150579 NA other downstream 2608691 9555659 ~ 9567097 (+)

Expression


Co-expression Network