srprb (srprb)


Basic Information

Item Value
gene id srprb
gene name srprb
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7606489 ~ 7611611 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678805.1
GTGTACTGCGCATGTGCGCGGGCGCTGTAAGTACACGTGTGTGTTCAGTGCCTCAGtgacagaagcagcagcagcagcaccgccGCTATGGAGGAGAAGATTAACCTGGATTTGGAGGATTTTTCCTCCGAGCCGTTTCTGGACTCGCTGGTTAAAGAGTTTATAGAACAGGACCCTGCTTTCCTAATCGGGGTGTTCGTGGCTTTAGCAGTGGTTATAATAACAGTAGtgttatttAAGTTTCTCTTCAGTACCAAGACTAAAAGAAGCAGTGTGCTGCTGGTGGGTTTGTGTGATTCAGGGAAGACTCTTCTCTTCAGTAGACTCTTGGCAGGGAGATTCACAAACACTCAAACATCCATCTCTGAAAACAGTGCAaactataaaaccaaaaatgagAAGGGTACCACCTGGACTCTTGTTGACCTTCCTGGCCATGAAAGTCTGAGGCCTCAGTTTTTGGAGAGGTTTAAGGCTTCTGCAAGAGCGATAGTGTTCGTGGTGGACAGTGCAGTCTTCCAGAAGGAGGTGAAGGATGTGGCTGAGTTGCTTTACTCCTTGCTGACGGACAGTGTGGTGACCAGGAATGCCCCAACTCTGCTGATCGCGTGCAACAAACAAGATATTACAATGGCGAAGTCAGCCAAACTGattcagcagcagctggagaagGAGCTGAACACTCTGAGGATGACCCGCTCTGCAGCCCTCACCTCTCAGGACGGCTCTGACGGGACAGCGGTGCACTTGGGGAAGAGAGGGAAGGACTTTGACTTCTCTCAGCTGCCCATGAAGGTGGAGTTTGTAGAGTGCAGCGCTCGTGGCAGCAAGGGTGAAGACGAGGACGCCGACATCGAGGCTCTGGAGAGGAGTCTGGCTAAGCTGTGATGGACTGATCTGTGAttgattgttgtttttcttccaTTCAGAAACTCCCTCTTAATGCACGTGTTTGCATTAAACGTCTTCGTTATTTACTTTCTCGTCAGTATTGTTTCTTATGACactataactttttttttaattagaattctCCCAGGTGAcaaaatttaactttattttccCCTCAATTTGCTCTAAGTGCAAGATTGATAACCAAGGTATTGGTAAGAGCCCATCTCTTGGTACATCTTAATGTTTTTCATAAAGGGTTATGACTCTAACCCTAGataatgaaatattatttatttttgtgggcGGATGTGATGCTTTTCAAGGTACAATGCATTTGTTACTCTGTCATTTATGTCATGTCCATGTCTGCTTTGTGCCTTAGAGCTGAGATCCAGCTAACGACAATGTAGTTTTGGTCCTGCATCAACTTTGaacaactgtaaataaataaataaataaagtttttctgATGTTTGCATTCTTAAA

Function

symbol description
srprb Predicted to enable GTP binding activity. Predicted to be involved in protein targeting to ER. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be part of signal recognition particle receptor complex. Orthologous to human SRPRB (SRP receptor subunit beta).

NR:

description
PREDICTED: signal recognition particle receptor subunit beta

GO:

id name namespace
GO:0007264 small GTPase mediated signal transduction biological_process
GO:0005622 intracellular anatomical structure cellular_component
GO:0005525 GTP binding molecular_function

KEGG:

id description
K12272 SRPRB, SRP102; signal recognition particle receptor subunit beta

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678805.1 True 1380 mRNA 0.45 7 7606489 7611611

Neighbor

gene id symbol gene type direction distance location
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 66353 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 659521 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 665292 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 667506 6935130 ~ 6938983 (+)
nmd3 nmd3 coding upstream 700848 6894328 ~ 6905641 (+)
neu4 neu4 coding downstream 8986 7620597 ~ 7627540 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 210370 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 379883 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 564498 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 686633 8298244 ~ 8299583 (+)
G150015 cux1 non-coding upstream 222511 7374013 ~ 7383978 (+)
G150002 NA non-coding upstream 322153 7273205 ~ 7284336 (+)
LOC111194505 NA non-coding upstream 351898 7253026 ~ 7254591 (+)
G149960 NA non-coding upstream 712838 6893316 ~ 6893651 (+)
G149952 NA non-coding upstream 799447 6804479 ~ 6807042 (+)
G150060 NA non-coding downstream 36012 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 42817 7654428 ~ 7659678 (+)
G150069 NA non-coding downstream 68057 7679668 ~ 7740088 (+)
G150104 NA non-coding downstream 195255 7806866 ~ 7807171 (+)
LOC111194509 NA non-coding downstream 254499 7866110 ~ 7873133 (+)
LOC111194506 NA other upstream 355123 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 658553 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1020120 6583046 ~ 6586369 (+)
G149754 NA other upstream 1879069 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 2347628 5227918 ~ 5258861 (+)
G150099 NA other downstream 158073 7769684 ~ 7805254 (+)
G150131 NA other downstream 263029 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1037219 8648830 ~ 8656708 (+)
G150579 NA other downstream 1944048 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2239607 9851218 ~ 9852854 (+)

Expression


Co-expression Network