neu4 (neu4)


Basic Information

Item Value
gene id neu4
gene name neu4
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7620597 ~ 7627540 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678808.1
GAACAGACAGTGTGTTACAGACTGTATCTTCCACTGTACTTGTTGTCACCGATGACCATCGCTGGACCATGGGATCCTCGTCCTACTTCCCTGCCCGCTCAGTGCTGTTCCGGAAGGAAGCGAATGGAGTGACATATCGCGTTCCAGCTTTGATCTTCCTGCCTCGTTCCTCCTGCTTTCTGGCCTTCTGTGAGGAGAGACTGAGCCCTGCTGACTCCCAGGCTCATCTCCTGGTCGTGCGCAAGGGACACTTCTACAAGAACTATGTGGAGTGGGAAGACATGGAGGTACTGAGCACAGCCTGTCTGAAAGGCCATCGCTCCATGAATCCATGCCCAGTCTACGACGTCTTCACAGGAacactcttcctctttttcatcGCTGTCTTGGGGCACACCACCGAGGCGTACCAGCTAATAACGGGCAAGAACGTAACCAGGCTCTGCTATGTTTCCAGTGATGATTGTGGAAAAACCTGGAGTCCTGCCGTGGACCTCACCAAGAAGGTCATAGGAGACACAATCAAAGAGTGGGCTACCTTTGCTCTTGGACCAGGCCATGGCATCCAATTGAAGTCCGGTCGCCTGTTGATCCCAGCCTATGCCTACCACATTGACTGCAAGGAGTGCTTCGGCAAGGTGTGCACCACCACTCCCCACTCCTTCTGCTTCTACAGCGACACGCATGGGAGGGTGTGGCGATTTGGGGAGGCAGTTCCAGGTCCTGAATGTGTTGAGTGTCAAATGGTGTCCATAGACCAGGAGGATGGGAACAACGTTTTGTACTGTAATGCCCGTAGTACTCTCGGTTGCCGTGTGCAGGCCTTGAGCTTCGATGATGGAGCTGTGTTCCAGAAGGGTCAGTTGGTCCAAAAGCTTACCGAACCTCGGAACGGCTGCCACGGCAGTGTGGTTGGCTTCCCGGCCCCCTTGAACCTCCTCCAGAACTCCCCTACCCTTCTCAGGCGAGTAACGTCCGCTGTTGGCTCTTCATCTGTTTTAGTCGAGAACTCTCCCCAGAACTTTCTGATACCAACATGGACGGTATATGGACACCCATCTGGACCAGGTCGACGTGACCTAGGCCTGTACCTTAACATCCAACCCCGAGACCCTGACTGCTGGACAGGGCCATGGGTCATCTACGAGGGTCCGAGTGCCTACTCGGACCTGGCCTACCTGGATTTCCAGACTGATGGGGCTCCACCACTCACTGCGTTTGCATGTTTGTTTGAGAACGGCACAAGGACGGCCTACGACGAGATTTCCTTCTGTATTTTCACTTTGTTCGAGCTCATTGACAACATTCCTCGCAACAAACCACACCTCAGGGGTGTTGAGGCCTCAGGGGTAAAAgacaagaggaagaggaagaagaagagaggaatGTGTGAGCTCTGCAGAGTGTGTTAATACTATGTGAAAGCATGGGAAAGCAGAAGAATCTGAAGTATTGCAAAGTTATGTAAGCTTTTTACAGAGTAGATTTCTTGGTAGTATAttgtaatatgtatttatgtacgCCTAGTACtgtactttattatccttcCAGAGTCCAGAGTCCACCATAGAACAGCTGTTACTTggatggtgggtcattctcaacACTGCGTTGATATGCACTGGCACagtggtggtgtgtgttgtgctggtacatgctggtcagacacagcagtgctgatggagtttttaaacacatcattGATTATGAAGAATGGTAaacagtgagtggacacagtgtttaaaaactcaagaagcactgctgtgtctgaccaACACACCACCGCCATGCCAGTACATATAAATGCAGTGTTGAGAATGACCCATCACCCAAATATAACATACCTACTCAGTGATGGTCCTGTAGGGTCCTAAAGGGAagataatacaatataatgaagaaaacaaacagataCAGGCCTACAGTCTGTAGTTTTAGAACTATACAAGTGCTCTTATATGTTCAGTAGAGCTTGGGAAATttgataatgggtgtagaaacaaggaggtggtcataatgttatgcttgatgttatacatagagaaagagatagagagagaatagaattattgttaattaaaaGCTGTAAAAGTTGTGTTGACATAAGTTTCCTTGCAAAAGCAGAGAAGCCATTTTATTGGCTGCATCTATTTAATGTAGAGTTCCCCAGGGCTCAATTCTAGGGCCCTTTTTTATTAACAGTGTATATGGTGTTTTTGGGGACtattgtttagttttattcCATTGCTACAGTACGtcagtataatacagtatgatTATAACTAGATCTATGTACTTTTAAAGAAACTGGATTTCACATCATTGATTGCTCTGTTAAGTTGCCTTGAATATCGTCgccgtccaatgaaaaacacttatctccaaaacagctactttacagagagagaaaaaacttgtacactttcaa

Function

symbol description
neu4 Enables exo-alpha-sialidase activity. Acts upstream of or within ganglioside metabolic process. Located in endoplasmic reticulum. Is expressed in several structures, including heart; integument; lens; pleuroperitoneal region; and solid lens vesicle. Orthologous to human NEU4 (neuraminidase 4).

NR:

description
PREDICTED: sialidase-4

GO:

id name namespace
GO:0001573 ganglioside metabolic process biological_process
GO:0005783 endoplasmic reticulum cellular_component
GO:0004308 exo-alpha-sialidase activity molecular_function

KEGG:

id description
K12357 NEU2_3_4; sialidase-2/3/4

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678808.1 True 2428 mRNA 0.47 4 7620597 7627540

Neighbor

gene id symbol gene type direction distance location
srprb srprb coding upstream 8986 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 80461 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 673629 6944489 ~ 6946968 (+)
LOC111194503 NA coding upstream 679400 6939059 ~ 6941197 (+)
LOC111194502 NA coding upstream 681614 6935130 ~ 6938983 (+)
LOC103046888 LOC103046888,LOC108424009 coding downstream 194441 7821981 ~ 7837425 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 363954 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 548569 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 670704 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 701758 8329298 ~ 8357694 (+)
G150015 cux1 non-coding upstream 236619 7374013 ~ 7383978 (+)
G150002 NA non-coding upstream 336261 7273205 ~ 7284336 (+)
LOC111194505 NA non-coding upstream 366006 7253026 ~ 7254591 (+)
G149960 NA non-coding upstream 726946 6893316 ~ 6893651 (+)
G149952 NA non-coding upstream 813555 6804479 ~ 6807042 (+)
G150060 NA non-coding downstream 20083 7647623 ~ 7647886 (+)
G150065 LOC108424050 non-coding downstream 26888 7654428 ~ 7659678 (+)
G150069 NA non-coding downstream 52128 7679668 ~ 7740088 (+)
G150104 NA non-coding downstream 179326 7806866 ~ 7807171 (+)
LOC111194509 NA non-coding downstream 238570 7866110 ~ 7873133 (+)
LOC111194506 NA other upstream 369231 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 672661 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1034228 6583046 ~ 6586369 (+)
G149754 NA other upstream 1893177 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 2361736 5227918 ~ 5258861 (+)
G150099 NA other downstream 142144 7769684 ~ 7805254 (+)
G150131 NA other downstream 247100 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 1021290 8648830 ~ 8656708 (+)
G150579 NA other downstream 1928119 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 2223678 9851218 ~ 9852854 (+)

Expression


Co-expression Network