ap1m1 (ap1m1,LOC107696211)


Basic Information

Item Value
gene id ap1m1
gene name ap1m1,LOC107696211
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7991494 ~ 8017086 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678815.1
CCCACAGTGGCAGGGGGCAGCACTGCTGTTCTCACTCGAACCGGGTAAACCGGTGGCCCGATACCCCAACACTCAGTATTTGAGAGGATTTCAGTAGCTCAGGCTGATGTTCAGGGTCTGAAGAGGTTTATATGTGAGGAGAAGCAGCAGCTGGATCTCTGGAGCTGAAGATCAGCGCGCAGGAGCTCCGTCATGTCGGCGAGCGCGGTGTACGTGCTGGATCTGAAAGGCAAGGTCCTCATTTGCCGTAACTACCGCGGCGATGTGGACATGTCTGAGATCGAGCACTTCATGACCCTGCTGATGGATAAAGAAGAGGAGGGGACTCTTTCTCCCATCCTGGCCCATGGAGGAGTGCGCTTCATGTGGatcaaacacaacaatctctacCTTGTTGCTACATCTAAGAAGAATGCCTGTGTTTCCTTGGTTTTCTCCTTCTTGTATAAAATTGTGCAGGTGTTCTCAGAGTACTTCAAAGAGTTGGAGGAGGAGAGCATCAGAGACAACTTCGTCATCATTTATGAATTGCTGGATGAGCTGATGGACTTTGGCTACCCACAAACGACAGACAGCAAGATCCTGCAGGAATACATCACACAAGAAGGCCACAAGTTGGACACAGGTGCCCCACGCCCCCCGGCCACAGTGACCAATGCAGTGTCTTGGAGGTCAGAGGGCATAAAGTACAGGAAGAACGAGGTTTTCCTGGACGTCATCGAGTCGGTCAACCTCCTGGTCAGTGCGAATGGAAACGTCCTGCGCAGTGAGATTGTGGGCTCCATTAAAATGCGAGTGTTCCTCTCAGGCATGCCGGAGCTGCGTCTGGGCCTCAATGACAAGGTCCTGTTTGAAAACACTGGACGAGGGAAGAGCAAGTCTGTGGAGCTGGAGGACGTGAAGTTCCACCAGTGTGTGCGTCTGTCTCGCTTTGAGAACGACCGAACCATCTCCTTCATCCCTCCGGATGGAGAGTTTGAGCTCATGTCTTACCGCCTCAACACACACGTGAAGCCACTGATCTGGATCGAGTCTGTGATAGAGAAGCATTCACACAGCAGAATCGAGTACATGATAAAGgCCAAATCACAGTTCAAACGAAGATCTACAGCCAACAATGTGGAGATCCACATCCCTGTGCCTACAGATGCAGACTCGCCCAAGTTTAAGaccactgtgggcagtgtgaaaTGGGTCCCAGAGAACAGCGAGATTGTCTGGTCAATTAAATCTTTCCCTGGTGGTAAGGAGTATCTGATGAGAGCTCACTTTGGCCTGCCCAGTGTGGAAGCGGAGGATAAAGAAGGGAAGCCACCAATCAGTGTCAAGTTTGAGATCCCTTACTTCACCACCTCTGGAATacagGTGCGCTACCTGAAGATCATTGAGAAGAGCGGATACCAGGCACTTCCTTGGGTACGATACATCACCCAGAATGGAGACTATCAACTCCGGACCCAGTAGTCGAACTTCAGCCTGTCTCCAGCAGTCTGTGGGCCTGGagccttctgtctctctctctctctctcttttactttctctcttgcctaatctctctctcttactttctctcctctctctgtgctGCTTTAGGGACTCTGAGGTAGTGGTCGTGTGTCTGTAGTGTTTGATTGGGAAACAAGTGGAACGAGTCTGCATATTCTTTACTTTCCAACTTTTCCACTTTTTAATCCCTGTAAAGGTTTGAAAAGACACatttcatatatacagtatgtacatttaagtggacaaaagtattgggacctTTTGTGGCACCCCTTTATTCATAATTAAGAGTGTATACAATGGTTATACTGGccgtttacagttttttttagtgtattattttttaggTGCTCCCCTCAAACACTGCAGGCATCTACATTTATCTATCTCAGACCAGCTGCAACACAGACCGTGGTTCCATGGACCATCAGTGTCTTTCTCTGTATGTGAGTCACGTCCAGATCATCACGTCCATTTGTGTTCTGCGCTAGTTCTTAAGGCCGTTCTTAAGGTAACCTCATTCAAGATCCAGTGCAGTTCAGAACAATCTGAACAatcaaagaaaacacaaaatatgcTCTGTATTATACAGGATAGTATCTGTATAAGAAGTGGCAGTGCTCAGCAGCTAGTAGCAGTTCTATATACAGTTCTCTGACTGTTTGCCAGGCATTATCATACACCATGCAGAATACCTTTCAAATGCACAGGGCCAGGATTGcagctttttaattttaaaagtcaatCTGATGGCTGTCCATTAGCATGTAAAGAAGTGTTGGGGTTCAGATTGACCACTTTTCCACTGCAAGGCCTAAGATTGGACCATACCAATTGgttgcattttctttttccatttcctGTGTTGCTAAATCTACAGGGTTTTATTGGCTTTATCACTCGCTTTATTGATTGTACCACAGTGCTGGCACACCAGGTCACCATGGCATTAGCATGGtggctaccagcctcatcccacattgtTACGACAGTGCTGGCATGCTGGCTTCACGTCTTGCCTGACTTCGCGACAGCATTGTAAGCACACCCCCTGCAGGTCTGGCTACTAGCTAGTAGCATACTGGCTACTAGCTTTTTCCAACATTACTAATGCAGCGCTAGACCACCAGGTATAAGAGTGTTCCATAATTGCTACTGTGGCATTAGCATGGTGGCTACCTGCCTCATCCCACATTGCTACGACAACGTTGGCATGCTGACTTCTCGTCTTGCCTGACTTCGCTACTACAGCTTTAGCACACCCCCTGCAAGTGTTGTCCAGCATCGTTCCCTCCAtcgttagcatgctggctactggCTTTTTC
>XM_022678816.1
CTGTATTGTTTTTCATAGCTGTGTGCACTCCTGTCTTAGGAAATCAAGGTCAGTGTTGTTACCCAGACTACAGGCTGGACTGACTAAAGCAGGTCCTCATTTGCCGTAACTACCGCGGCGATGTGGACATGTCTGAGATCGAGCACTTCATGACCCTGCTGATGGATAAAGAAGAGGAGGGGACTCTTTCTCCCATCCTGGCCCATGGAGGAGTGCGCTTCATGTGGatcaaacacaacaatctctacCTTGTTGCTACATCTAAGAAGAATGCCTGTGTTTCCTTGGTTTTCTCCTTCTTGTATAAAATTGTGCAGGTGTTCTCAGAGTACTTCAAAGAGTTGGAGGAGGAGAGCATCAGAGACAACTTCGTCATCATTTATGAATTGCTGGATGAGCTGATGGACTTTGGCTACCCACAAACGACAGACAGCAAGATCCTGCAGGAATACATCACACAAGAAGGCCACAAGTTGGACACAGGTGCCCCACGCCCCCCGGCCACAGTGACCAATGCAGTGTCTTGGAGGTCAGAGGGCATAAAGTACAGGAAGAACGAGGTTTTCCTGGACGTCATCGAGTCGGTCAACCTCCTGGTCAGTGCGAATGGAAACGTCCTGCGCAGTGAGATTGTGGGCTCCATTAAAATGCGAGTGTTCCTCTCAGGCATGCCGGAGCTGCGTCTGGGCCTCAATGACAAGGTCCTGTTTGAAAACACTGGACGAGGGAAGAGCAAGTCTGTGGAGCTGGAGGACGTGAAGTTCCACCAGTGTGTGCGTCTGTCTCGCTTTGAGAACGACCGAACCATCTCCTTCATCCCTCCGGATGGAGAGTTTGAGCTCATGTCTTACCGCCTCAACACACACGTGAAGCCACTGATCTGGATCGAGTCTGTGATAGAGAAGCATTCACACAGCAGAATCGAGTACATGATAAAGgCCAAATCACAGTTCAAACGAAGATCTACAGCCAACAATGTGGAGATCCACATCCCTGTGCCTACAGATGCAGACTCGCCCAAGTTTAAGaccactgtgggcagtgtgaaaTGGGTCCCAGAGAACAGCGAGATTGTCTGGTCAATTAAATCTTTCCCTGGTGGTAAGGAGTATCTGATGAGAGCTCACTTTGGCCTGCCCAGTGTGGAAGCGGAGGATAAAGAAGGGAAGCCACCAATCAGTGTCAAGTTTGAGATCCCTTACTTCACCACCTCTGGAATacagGTGCGCTACCTGAAGATCATTGAGAAGAGCGGATACCAGGCACTTCCTTGGGTACGATACATCACCCAGAATGGAGACTATCAACTCCGGACCCAGTAGTCGAACTTCAGCCTGTCTCCAGCAGTCTGTGGGCCTGGagccttctgtctctctctctctctctcttttactttctctcttgcctaatctctctctcttactttctctcctctctctgtgctGCTTTAGGGACTCTGAGGTAGTGGTCGTGTGTCTGTAGTGTTTGATTGGGAAACAAGTGGAACGAGTCTGCATATTCTTTACTTTCCAACTTTTCCACTTTTTAATCCCTGTAAAGGTTTGAAAAGACACatttcatatatacagtatgtacatttaagtggacaaaagtattgggacctTTTGTGGCACCCCTTTATTCATAATTAAGAGTGTATACAATGGTTATACTGGccgtttacagttttttttagtgtattattttttaggTGCTCCCCTCAAACACTGCAGGCATCTACATTTATCTATCTCAGACCAGCTGCAACACAGACCGTGGTTCCATGGACCATCAGTGTCTTTCTCTGTATGTGAGTCACGTCCAGATCATCACGTCCATTTGTGTTCTGCGCTAGTTCTTAAGGCCGTTCTTAAGGTAACCTCATTCAAGATCCAGTGCAGTTCAGAACAATCTGAACAatcaaagaaaacacaaaatatgcTCTGTATTATACAGGATAGTATCTGTATAAGAAGTGGCAGTGCTCAGCAGCTAGTAGCAGTTCTATATACAGTTCTCTGACTGTTTGCCAGGCATTATCATACACCATGCAGAATACCTTTCAAATGCACAGGGCCAGGATTGcagctttttaattttaaaagtcaatCTGATGGCTGTCCATTAGCATGTAAAGAAGTGTTGGGGTTCAGATTGACCACTTTTCCACTGCAAGGCCTAAGATTGGACCATACCAATTGgttgcattttctttttccatttcctGTGTTGCTAAATCTACAGGGTTTTATTGGCTTTATCACTCGCTTTATTGATTGTACCACAGTGCTGGCACACCAGGTCACCATGGCATTAGCATGGtggctaccagcctcatcccacattgtTACGACAGTGCTGGCATGCTGGCTTCACGTCTTGCCTGACTTCGCGACAGCATTGTAAGCACACCCCCTGCAGGTCTGGCTACTAGCTAGTAGCATACTGGCTACTAGCTTTTTCCAACATTACTAATGCAGCGCTAGACCACCAGGTATAAGAGTGTTCCATAATTGCTACTGTGGCATTAGCATGGTGGCTACCTGCCTCATCCCACATTGCTACGACAACGTTGGCATGCTGACTTCTCGTCTTGCCTGACTTCGCTACTACAGCTTTAGCACACCCCCTGCAAGTGTTGTCCAGCATCGTTCCCTCCAtcgttagcatgctggctactggCTTTTTC

Function

symbol description
ap1m1 Predicted to enable clathrin adaptor activity. Acts upstream of or within brain development and digestive tract development. Predicted to be located in Golgi apparatus and clathrin-coated vesicle membrane. Predicted to be part of clathrin adaptor complex. Predicted to be active in clathrin-coated vesicle. Is expressed in several structures, including central nervous system; digestive system; eye; gonad; and heart. Orthologous to human AP1M1 (adaptor related protein complex 1 subunit mu 1).

NR:

description
PREDICTED: AP-1 complex subunit mu-1

GO:

id name namespace
GO:0006886 intracellular protein transport biological_process
GO:0016192 vesicle-mediated transport biological_process
GO:0030131 clathrin adaptor complex cellular_component

KEGG:

id description
K12393 AP1M; AP-1 complex subunit mu

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678815.1 True 2831 mRNA 0.48 12 7991494 8017086
XM_022678816.1 False 2689 mRNA 0.47 12 7993503 8017086

Neighbor

gene id symbol gene type direction distance location
LOC103046888 LOC103046888,LOC108424009 coding upstream 154069 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 363954 7620597 ~ 7627540 (+)
srprb srprb coding upstream 379883 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 451358 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 1044526 6944489 ~ 6946968 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 159023 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 281158 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 312212 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 352283 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 369216 8386302 ~ 8394623 (+)
G150196 NA non-coding upstream 10094 7981094 ~ 7981400 (+)
G150203 NA non-coding upstream 22430 7968777 ~ 7969064 (+)
G150132 NA non-coding upstream 113544 7876195 ~ 7877950 (+)
LOC111194509 NA non-coding upstream 118361 7866110 ~ 7873133 (+)
G150104 NA non-coding upstream 184323 7806866 ~ 7807171 (+)
G150235 NA non-coding downstream 111380 8128466 ~ 8128760 (+)
G150239 NA non-coding downstream 138550 8155636 ~ 8155845 (+)
G150245 NA non-coding downstream 171181 8188267 ~ 8190741 (+)
G150254 NA non-coding downstream 190382 8207468 ~ 8261000 (+)
G150248 NA non-coding downstream 240826 8257912 ~ 8309434 (+)
G150131 NA other upstream 112193 7874640 ~ 7879301 (+)
G150099 NA other upstream 186240 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 740128 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1043558 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1405125 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 631744 8648830 ~ 8656708 (+)
G150579 NA other downstream 1538573 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1834132 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 2125038 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 2174434 10191520 ~ 10279830 (+)

Expression


Co-expression Network