LOC111194511 (LOC108427182,LOC108280696,LOC107750922,LOC105906996)


Basic Information

Item Value
gene id LOC111194511
gene name LOC108427182,LOC108280696,LOC107750922,LOC105906996
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8329298 ~ 8357694 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678824.1
gagagagagtgatgttgTTGCTAGGGAACAGTAAAAATGAAAGGTCGACCATCTTTCCCAGCCTGTATCACAGCAAAAACAGGGACATTCGCAAGGTGGTCCTCCCTCATACAGAGGCAATATAGACGAGACTAgattaaaaagcaattttattttcatttattatcaTTAAGAAGAGAGATGCAGACTGCATAGGGAGGTGGCAGACCGAGCCCCGAAGGTGAGATTACGCAATCGTCCCAGCACTGCTGTCTGCTGGGTGGTCTTCGCTGGAGAGGGATTATGACAGTATCCAGGCTGGAACTGCGTCTATTTTGAACACCCATGTGAAAATTCCCTCAGCCCCTGAGGAGATGAACCAGATCCTGCAGCGGGGCATCCATCcaggcggcagcagcagcagcaggcaaAGGTGGCAAAGGCAGCCCGGGTTTACGTCTTCCAGCTCAGGAGAAAGGAGCCGCTACATGTGAGTGCCAACCACCAGCTGCCCGTTCCTgaccagagaaagagagaaagagagacagagaggaggaggaaaaaggAAGAGAGGCACAGCGCCGGTGACTGACTTCCCCTTCCTACAGTGGAGTGGAATGGATTTAAGTGGGTGCCGGCTGGAAAAAGAGCAAGCCTGGGCCTGAGGGAAGGAGCCGAGAGAAAACAGAAGGGAGGACAGCTTGTGTAAAGACTAAACTCTACTCGTTCTAATTGCTGTCTGCCTGAATCTCCAGAGAGGGGGATGGGCACAACAGAAGCCACTCTGCGCATGGAAAACCTGGAGGTAAAGGATGAGTGGCAGGATGAAGACTTTCCTCGGCCTTTGCCAGAGGATGGAGACTTAGACGGCCTTACTGACAACAGAACTTCTCCCCCCAGTTCGCTGCACGGAGGCCATGGAGGCTCAGCAGCGCAAAGGAAGCGTAGAACCCTGGTTGCCCCGGACATCAACCTCTCCCTGGACCAGAGCGAAGGATCCCTCCTGTCGGAAGACTTCCTGGACACACCTGATGACCTGGACATCAATGTAGACGACATCGACACACCGGACGACACCGACTCTCTGGAGTTCATCACCAATGGAAACGAGTTAGAATGGGAAGATGACGCCCTGGTGGCGTGTGCTAAAGGGGCTCCGGGTGCCGGCTCAGGCCACGGTGGTGAGGATGGTGACGGGACCGGGCGTCTTTGGAGGACTGTGATCATCGGGGAACAGGAGCAACGGATAGACATGCAGGTCATCAGGCCCTATTTGCGGGTGGTCACTCATGGAGGTTATTATGGAGAAGGCCTGAGCGCTATCATCGTGTTTGCGGCGTGCTACCTCCCAGACAGCGGCTGCACAGACTACCATTACATCATGGAGAACCTTTTCCTGTATGTTATAAGcagtctggagctgctggtagCTGAGGACTACATGATCATCTACCTGAATGGAGCCACGCCTCGCAGGAGAATGCCTGGCATCACCTGGTTAAAGAGGTGCTACCAGATGATCGATCGAAGGTTAAGGAAGAATCTGAAGTGCATGATCATTGCACATCCATCCTGGTTCATTCGAACTGTGCTGGCCATCTCCCGGCCCTTTATCAGTGTGAAGTTCCTGGATAAGATCAGTTATgtgcagagtctggaggagcTGGCTCAGATCGTCCCCATGGAGCATGTGCAGATTCCAGAGTGTGTGCTGCAATACGACGAGGAGCGTCTGAAGGTCCAGACAGAAAGGCTTGAACAAGACCAGAAACCAACAAGAACAGAAACATCAGTCCCAGAAAGGCCTGTGTCAGTGGCTGCAGAGGCGTGTCCTTGACTTCAGGATCTCTGAAAGCACTGACACCAAGATCTGCGTGGAACATTCTTCTATTACgtccatcatcttcatcactgcCTACAATCCAGCTACTCATCTTCATCCCTCTGTCTGAAGAGGAGCTGTTAACGGTCTCCATATCTACGTCACCCTCATTCTGACCTGAACTGTGGGGCACAGCTGTACAAATGAAGGATGGAAAAAGACACTCTGTTGTGTAATAACTGTTTTCTTCCACTTGAAGTGCGACACCTGTATAAACTCCAGCTGCTTCAAAAAGTGACTTTTTGAAACAAGACTTTTTGGAACGGTCAAGAACATCTTTTAAGGTCTTTCGAGGCCTAGAAACAGATGCACAACCAGCCCTCCAGTGGACGATCCAGCCTTGTTTCTAGCCAGCATCTCTCAGAGCTCATGGagaatttttgtttttgcacaaTGTTGCCAAATATTGAAGTGTAATATAgaaattgtgattttatttctgtaataggAGCCTTCCATCGCTGTCACAAGAGAACCTCATATTTGAAAAATGgtgactttacaggagaagtaTTCTTATATGTCTTATATTTTAATGTGACAATAATTACATTCAGGATACTGTGGTCCACTGATTAGGAAATGTTCACaccaatgaaaaaaatgcagaaagcaTGGGCACCATTGTTCCATTCTTTTCTGTTCTATAAAAAATTAAGCCTAAATTTCTTTCCCCAGAACAAGTCAGGTGTCTCAGGCTGCCTTCATTAAGTTTACACTGCTGCCTAAAACACCAGAAGCATGTCAGGGTGCAGGAAGTAGAGGATGCAGAGGCAAACACAAATGCAAATATacttatgtatatttattaacaataaacaacaaACCATAAAACAAGAACTGAAACAAGAAAGAAACCACACTCACCTTAACTGGCACAAACgtgtacaaaaaacaacaaaaaaaaa

Function

NR:

description
PREDICTED: caytaxin-like

GO: NA

KEGG:

id description
K18450 ATCAY; caytaxin

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678824.1 True 2769 mRNA 0.48 14 8329298 8357694

Neighbor

gene id symbol gene type direction distance location
LOC111194453 NA coding upstream 29715 8298244 ~ 8299583 (+)
LOC103039989 LOC108427187,LOC108429492 coding upstream 149679 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 312212 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 491873 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 701758 7620597 ~ 7627540 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 11675 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 28608 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 125852 8483546 ~ 8493022 (+)
upf1 upf1,LOC107724030,LOC107696277 coding downstream 137401 8495095 ~ 8519332 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding downstream 164456 8522150 ~ 8580869 (+)
G150269 cplx4c,LOC108427184 non-coding upstream 4650 8313027 ~ 8324648 (+)
G150248 NA non-coding upstream 19864 8257912 ~ 8309434 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding upstream 49416 8276305 ~ 8279882 (+)
LOC111194510 NA non-coding upstream 53792 8271313 ~ 8275506 (+)
G150254 NA non-coding upstream 68298 8207468 ~ 8261000 (+)
G150297 NA non-coding downstream 78901 8436595 ~ 8437402 (+)
G150292 NA non-coding downstream 224750 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 234447 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 282197 8639891 ~ 8640174 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding downstream 284674 8642368 ~ 8647191 (+)
G150131 NA other upstream 449997 7874640 ~ 7879301 (+)
G150099 NA other upstream 524044 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1077932 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1381362 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1742929 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 291136 8648830 ~ 8656708 (+)
G150579 NA other downstream 1197965 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1493524 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1784430 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1833826 10191520 ~ 10279830 (+)

Expression


Co-expression Network