pgpep1 (pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549)


Basic Information

Item Value
gene id pgpep1
gene name pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8483546 ~ 8493022 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678827.1
gagctgagaggAACTGAGAGGAGGAAGAGCAGCGCAGGAAGAGTTGCTGGGAGTGGAGTTGGTGGTTATTTACAGTCAGAGATCATCAGCGCTTCTCTCATGATCCTCAGATCTGCTCCCTGAACTCTCTCTACAGACTGACCTCAGTTCagctactgcagcagcagcagcatggagCACAGGAAGACTGTGATAGTCACAGGTTTTGAGCCTTTCGGAGAGCATGCTGTAAACGCCAGCTGGGTGGCTGTGCAGGAGCTGGAGAAATTGGGCTTGGGGCAGAATGTTGACCTGCATGTCACTGAGGTTCCTGTGGAGTACCAGGCAGTCCAGAACCTTCTGCCATCACTGTGGAAACAGTACCACCCACAGTTAGTGGTCCATGTTGGAGTTTCTGGGATGGCTACCACAGTAACCCTGGAAAAATGTGGGCACAACCATGGTTACAAGCGCCTTGACAACTGCAACTTCTATCCCGAGACGGAGTGCTGTATGGAAGGGGGACCGGACTGCATCCACTCCCTTATAGATATGGACGCTGTCTGCAAGAGGGTCAACTCCTCAGACCTCGGAGTCACTGTGTCTGTCTCGAAGGACGCCGGCAGATACCTGTGCGACTACACCTACTACACATCTCTGTACCTGGGCAAGGGAAGGTCGGCCTTCGTGCACGTGCCGCCTCTGGGGAAGCCATACAGCGCCGTGGACCTGGCGCGGGCCCTCAGGGCTGTGGTGCTGGAAATGCTGGAACTGATGGAGCACAACACAGAGAAGCAGCTGTGCTCACATGGCCACTGAGACAACAGGGGAGTGTCCCAAACAGCCCCCTCGCTGACTATGTAGTGTGTATGTACACACAGACAGGAAGTTAGCTGTCAGCTGTGTTGGATGATGTCAATATTGAGCACACTACATAGGCAGCGCTGGGCTGCTTGGGCATGCACCTGCATCCTTACACCTAGCATTGCTGGGGCCAAATAGGAACGGACGGCACTTTACGGGGTATAGTCAAAAGATGCTGAGACTGAGTCGTGGTGCTATGTATAAAACAAACTATTTTTGAATTGGCGTGAATGAAAACAGAGGAAGTAAAGGCtatgtatataatattcacaCCTCGGCAGCTTTTTAATATACCCCGGTCACACTATGAACAGAAGGCAGTTGAGTTGTTTTGcatatatcattgctgtcacaTCAAAACCCTTGTATTTCCAATGtgtttattctattttaaaatctgtatttttcagtctataaggtgcaccggattataaggcgcactatcaatgaacgtcttcTAGTCTTTTTTCTAGTCTTGGCAGCTCTAGctctagccacagttagcaagcgcttagccagtctcagttagcagcactagccagccccgttTAGCAACGATAGCCAGACGtggttagcactagtaaatgctgcccaatAGTGGTaaactgagaaaccctgagtgttccggtaacccagggcacaCTCAGCTatcggttcatcccacataccttgttttaacacagtaaactacAGTCGAATATACTTACccctgaacagtgaaagagctagtgctgcagttagcagttaatgctaatactgctcaagccccagtgctggagaaagtttactgaaactcctgtataatgctgcactttagttaatacctgactggtaaaattcatacataaggagcaccggattataagcactgaatatttgtgggaaaattaaagaatttttacTGCGCCTTatagttttataataaataaataagctaaaTTCAACAAATATGTAGAAATCGATCTACAACAATTATATGATCTtaattagatattttaaaaacacttaacaACTATTGCACAGCTATGAAACAGAATTCAACAATGCAATTAATTGACTTATAGCTAGTAGTAGTAATTATATGGTCCGCATCCGAGTGAATCACTGTATTCACACTTGCCCAATTGAACCATAGTCCCATTTAGGAAGACAAAAAGtgtgagtgtaaaaaaaaaaagaaaaggcccTTAAAATTAAGTGTGCCACCTGTATGTTACATTAGCACACTACAGCACTTTGAATTAAACATGAGCCTGGACTATCCTCCCAGTTAGATCATTATATTCAGGGGTCAggcttttaatgtaaatttatcattttggagatacaagattTGATGTGACGGTGACAATAAAAgtattacacattttattttcagttaaaATGAGAAGCTGGAGTGTTCAGCTTTAGCACAGACACTCATGTTAATACTGAAAGTGAAAGCACGTGTTGTATTTGGTGGGAATGAGTAACAAGTGGGTTGTGCACTAAAAGAGTGGGCTAAACAAGTGGGGGTAAGGATAGAAATGTCAGCCTGTACAGTGCCTATGGCAAtgaaatattagctagctcttaAAAGTTATTAGATGTTCTAGGGATGCACCGAAGTAAAATGTTTGTGCCTAAAccgaaaaaaaaagacatttttaagtttgctgctttttacaagtaaaaatattaaatagacTTGCTTTTCAAAGACACACTAAAGATTTTAaatatcccagcagacaaaccaaccAAGAACTACactttacctcagtagtgctattctggccatacatttatttcagcagtgctgttctagcAAGTCATAAACTTAAATTAACATAAATTTCTAACTAAGTAATTatcttaatatataattatataatatataattatatttttatatattatccCTGTAGTTTGctcactctctacacatcagCTTTGCTTTAAAAAATCCTAACATTAGAGTAAACACTGCAGTTTTACTTCAGTGTACCTTCAGTAAattattctgattttatttttttgtctgaacacctaaagtgctttttatttgccatttttggctgaattctttcggttgccaaatattctgtgcatccctagtagtatcttttttttattattattaatgatgtaTTTGTAATACATGATCATGGTCAAAGCACACTGCTTTGAAAATCCTGTTGCCTTCTGCTTTTATCAAGGGTCTTCTGCCAACGTTGTACGCAGCTAACTCTTCAGGGCTACTACAGCTAACTGTCAGCCAGCTTTCCTGTGATAAATGAAACTGTGAAATCAGGGTTGACCTTTataacctgttgtttgtcaTCTCTCAGTGACCTTTTTCCACACAATGATGTCAGAGTTCACATTCTCAAGCATATATATCACTGCTGTCTTAATAAATAAGCATCTCCAAATTAATGTATATAATGctcttaatatttaaataggaaaaaatataaattcagAATTTCTGCATAATTCAGTTCAATGATTAAGATATACACAGTCATTCAGAGTGATATGATCTTAAAGAGAGACTTATTATGACTTTGCAATAGTAAGTACAGTGTGATTTGAATTCCAGTGGTTTTGATTTAACACAGCATTTATCAAAATCAAAACGCAAATCACACAAATGTGTATGTTGTATAAAATTGGATAATTCCATTCAAaactgaaatataatataatatgctgaaaataatatataatataatgtatttgttGGTTAGTAGATATGGTGCAATCACGTTTAACACCTATTAAATTCAACACATTCTTCAATAACATATCAGGGTTATGCAGTGTTTGTGTTGCTGAAtaataagctaattaaaatattaaggtattagcatgtttgtgtttattaactCACACAACCACTGTGAAGAGTTCTGACCTGGGAATCAAGCATTTGACACTCTGAATGTCTTTTGgtatatatcttaattatttaattatgcaGAATATATTACCCTTAACTTTAATGTGAGCAATTCCTATCTCTATTTCTATTTCAGTTTATTGAACCGTTTTATATGACCGCAATGATATTAGTAAACTTATGGGCCTGAATTGTGCCTATATAAGTTATAGAAATATTATAGCTTTAGGAAAGTTTTAGTTTCAGGAAATCCTGGAAGTGGAagaatttacttttatttacttaattttcagtctatttttttttaaaggagcatttttgtttatttgtttgtctgtttattaAAGAAACACTGGACCAATCTGGAACTGTGAAGCTGGTTGCTCCAGTTTATGATGTCTACCTACAGTCTTTCTCATCATGTCACGTTTAACCTGTGGAGTGGTTTGTTATTTTCagctgtgagaaaaaaaaaaatgcttgtgAATGCTTTATTGGAATTAAATGGATTTTCTGcaggaaaaaatgtgatttgatcTACGTCATGATAAATAAAGACACTGTTATTTAACAAATGA

Function

symbol description
pgpep1 Predicted to enable pyroglutamyl-peptidase activity. Predicted to be involved in proteolysis. Predicted to be located in cytosol. Orthologous to human PGPEP1 (pyroglutamyl-peptidase I).

NR:

description
PREDICTED: pyroglutamyl-peptidase 1 isoform X2

GO:

id name namespace
GO:0006508 proteolysis biological_process

KEGG:

id description
K01304 pcp; pyroglutamyl-peptidase

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678827.1 True 4305 mRNA 0.38 5 8483546 8493022

Neighbor

gene id symbol gene type direction distance location
LOC103032299 NA coding upstream 88923 8386302 ~ 8394623 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding upstream 110360 8369369 ~ 8373186 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding upstream 125852 8329298 ~ 8357694 (+)
LOC111194453 NA coding upstream 183963 8298244 ~ 8299583 (+)
LOC103039989 LOC108427187,LOC108429492 coding upstream 303927 8176109 ~ 8179619 (+)
upf1 upf1,LOC107724030,LOC107696277 coding downstream 2073 8495095 ~ 8519332 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding downstream 29128 8522150 ~ 8580869 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding downstream 174900 8667922 ~ 8680860 (+)
polr2e polr2e,polr2eb,LOC107669821 coding downstream 284638 8777660 ~ 8783198 (+)
LOC103025531 LOC108427106 coding downstream 372549 8865571 ~ 8878804 (+)
G150297 NA non-coding upstream 46144 8436595 ~ 8437402 (+)
G150269 cplx4c,LOC108427184 non-coding upstream 158898 8313027 ~ 8324648 (+)
G150248 NA non-coding upstream 174112 8257912 ~ 8309434 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding upstream 203664 8276305 ~ 8279882 (+)
LOC111194510 NA non-coding upstream 208040 8271313 ~ 8275506 (+)
G150292 NA non-coding downstream 89422 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 99119 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 146869 8639891 ~ 8640174 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding downstream 149346 8642368 ~ 8647191 (+)
G150469 NA non-coding downstream 392766 8885788 ~ 8886029 (+)
G150131 NA other upstream 604245 7874640 ~ 7879301 (+)
G150099 NA other upstream 678292 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1232180 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1535610 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1897177 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 155808 8648830 ~ 8656708 (+)
G150579 NA other downstream 1062637 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1358196 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1649102 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1698498 10191520 ~ 10279830 (+)

Expression


Co-expression Network