upf1 (upf1,LOC107724030,LOC107696277)


Basic Information

Item Value
gene id upf1
gene name upf1,LOC107724030,LOC107696277
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8495095 ~ 8519332 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678828.1
ACGTCGCCGTTTCGAGTGGGAGTTGGAGCGAGTGTGCTTTCATTTGAGAAACGTCGTTCTGCTCCGAGTTTAACGGAAAACGGGCTCCGCGCACGGACTCGGGCTGCGTTTCTGCACGTTTTTCAGCGCGCTGGTCTCGGAGGGGGTCGGTTTGGAAGACAGACGCCGCCGGTCACGATACGAATACAGGAGAATATGAGCGTAGAGGCGTACGGGCCGAGCTCGCAGACTCTCACCTTCCTGGACACGGAGGaagcggagctgctgggagccgATACCCAGGGCTCGGAGTTCGAGTTCACCGACTTTACCCTGCCGAGCCAGACCCAGACACAGGGCCAGACCCAGAGCCAGCTGGACAACCAGgtgaaCGGACCTGATGGAGTTTTACAGAACGGAGAGGATGCTGTTGTGAAGACCAGTCAACTTCTGGCTGAACTAAATTttgaggaggatgaggaggacaCCTACTACACCAAGGATCTTCCTGTGCATGCCTGCAGTTATTGTGGGATCCATGATCCTGCCTGTGTGGTTTACTGCAACACCAGCAAGAAGTGGTTCTGCAATGGACGTGGCAACACATCTGGCAGCCACATTGTCAATCATTTGGTGAGGGCCAAATGTAAGGAGGTGACTCTGCATAAAGATGGTCCCCTGGGGGAGACTGTGCTGGAGTGTTACAACTGTGGCTGTCGTAATGTCTTTCTCTTGGGCTTCATCCCAGCCAAGGCTGATTCTGTTGTGGTGCTCCTTTGCAGGCAGCCGTGTGCCAGTCAGAGCAGTCTGAAGGACATTAACTGGGACAGCTCCCAGTGGCAGCCTCTGATCCAGGACCGCTGCTTTCTGTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTGAGGGCACGTCAGATCACTGCTCAGCAGATCAACAAACTGGAGGAACTCTGGAAGGAAAACCCTACAGCGACGCTTGAGGATTTGGAGAAACCCGGTGTGGACGAGGAGCCTCAGCATGTGCTTCTGCGCTATGAGGACGCCTACCAGTACCAGAACATCTTCGGCCCACTTGTTAAACTGGAGGCAGACTATGACAAGAAGCTCAAAGAGTCCCAGaCCCAAGACAATATAACTGTCAGGTGGGACTTGGGACTGAATAAAAAGAGGATTGCTTATTTCACACTTCCCAAGACGGATTCAGGTGACATGCGCCTGATGCAGGGGGACGAGATCTGCCTGCGCTATAAGGGAGACATGGCTCCTCTCTGGAAGGGGATTGGGCACGTCATCAAGGTCCCTGACAACTATGGAGATGAGATTGCCATTGAACTGAGGagcagtgctggagctcctGTGGAGGTGCCCCACAACTTCCAGGTGGATTTTGTCTGGAAATCCACTTCCTTTGACCGCATGCAGAGTGCCCTGAAAACATTTGCTGTGGACGAGACCTCAGTGTCCGGCTACATCTATCACAAGCTGCTTGGTCATGAGGTGGAGGATGTGATCATtaagtgccagctgcccaagcgCTTCACTGCCCAAGGCCTGCCTGACCTTAACCACTCACAGGTGTATGCAGTGAAGACTGTGCTGCAGCGTCCCCTCAGTTTGATCCAGGGGCCTCCAGGTACTGGCAAGACTGTCACCTCAGCAACCATTGTTTACCACCTGGCCAGACAGGGCAACGGACCAGTGCTGGTGTGTGCTCCCAGTAACATTGCTGTGGATCAGCTGACCGAGAAGATCCATCAGACAGGGCTGAAGGTGGTGCGTCTCTGTGCTAAGAGTCGAGAGGCTATCGACTCTCCTGTGTCTTTCCTTGCCCTGCACAACCAGATCCGCAACATGGAcagTATGCCAGAGTTGCAGAAGCTGCAGCAGCTGAAGGATGAGACTGGAGAGCTGTCCTCTTCAGATGAGAAACGCTACAGAGCTCTGAAACGCACGGCTGAAAGAGAGCTGctcatgaaCGCGGATGTGATCTGCTGTACCTGTGTGGGTGCAGGTGATCCTCGTCTGGCTAAGATGCAGTTCCGCTCCATCCTGATTGATGAGAGCACCCAGGCCACTGAACCAGAGTGCATGGTGCCTGTAGTGCTGGGAGCCAAGCAGcTGATCCTGGTGGGAGACCACTGTCAGTTGGGTCCAGTGGTGATGTGTAAAAAGGCGGCTAAAGCAGGCCTGTCTCAGTCGCTGTTCGAGAGGCTGGTGGTTCTGGGCATCAGGCCCATCCGTCTCCAGGTGCAGTACCGTATGCACCCTGCGCTCAGTGCCTTCCCCTCCAACATCTTCTATGAGGGATCCCTCCAGAACGGAGTCACTGCCGCTGACCGCATCAAGAAGGGCTTTGATTTCCAGTGGCCTCAGCCAGACAAGCCCATGTTCTTCTATGTGACGCAGGGCCAGGAGGAGATTGCGAGCTCAGGCACCTCCTACCTTAACAGGACTGAAGCTGCTAATGTGGAGAAGATCACCACTCGTTTGCTGAAGGCTGGAGCCAAACCTGACCAAATTGGAATCATCACACCGTACGAGGGTCAGCGTTCCTACCTGGTGCAGTACATGCAGTTCAGCGGCTCTCTGCACACCAAACTCTACCAGGAGGTGGAGATAGCCAGCGTGGATGCGTTCCAGGGCCGAGAGAAGGACTTCATCATCCTGTCCTGCGTCAGGGCCAACGAGCACCAGGGCATTGGCTTCCTCAACGACCCACGTCGTCTTAACGTGGCCCTCACCAGGGCCAGGTACGGCGTGATCATTGTGGGAAATCCTAAAGCTCTGTCCAAGCAGCCGCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTTCTGGTGGAGGGACCTCTGAACAACCTGAGAGAAAGTCTTATGCAGTTCAGCAAACCTCGCAAGCTGGTCAACACCATCAACCCTGGAGCTCGGTTCATGAGCACTGCCATGTACGATGCCAGGGAGGCCATGATACCCGGATCTGTGTATGATCGCAGCAACACTGGACGTCCATCTAACATGTACTTCCAGACACACGACCAGATTGGGATGATCGGCGCCGGGCCGAACCCCATGGCCTCCATGAACATCCCTATTCCCTTCAACCTGGTCATGCCTCCCATGCCCCCTCCAAGCTATCTGGGGCAGGTGAACGGCCCTGCTGCAGGCCGTGGAGCGCCAAAGGGTAAGACGGGTGGACGTGGAGGTCGCCAAAGGAACCGTGGCGTGGGAAACCATGGCAGTGGACAGGCCAACATGGCGAACAGCCAGGCAAGCCAGGATCTGGTGTCTCAGCCCTTCTCCCAGGGCCCCCTAACCCAGGGCTACATCACCATGAGCCAGCCCTCACAGATGAGCCAGCCAGGCCTGTCCCAGCCTGAACTCTCTCAGGACAGCTACCTTGGTGATGAGTTCAAGTCTCAGATGGATGTGGCGCTGTCCCAGGATTCCACTTATCAGGGTGAACGGGCTTACCAACATGGAGGAGTGACTGGACTCTCTCAGTACTAGAGTGTTGTTGGAACGGGAGCTAGGCCTATGCTGAGCTTAGTTCATCAGCATTTTAAATCTgggtaaatattaaaaaagaacaaacatgGATGCCCGTTTTCCACTGTTACAACTGAAGCACCATGGTGTGAGAGCAACAGGAGAGAATCAAACCAATCACACGAGtgaaaaaagagggagaaaagcAGGACAGGAAGAGAGAacgagggagtgagtgagtggagggGGGAAAACGACCTCACCACTCGCTAAGGCTGGGgaaggaggagagaggaggagacgCAGCGTAGGAGGGAAGGAGGAGACGATGTGGAAGGGAAAACAAACGAGATCTTCGATCTGCAACTCCGCAAAGTCAGAGGCCCCTCCTGGGGAGCAGGGGGGCCCCTCCCCTGCCTCCTCTCTCTCGCTGCCAGGCTGCAGCCGGCGGCCGCAGACCTCGCTCTGCCACCCGAGACGGAGAGAAGACGAAGTTCTCTTAAAACTACCTGCAAAAAAATACCAAGCTTGCTCTGTCGTCTCCACAAGCTGAAGGAGGGGGTGACGTCtttcaaaaacataaaaatctctataaaaaacGCTTTCAAGCAGCTGATTCTGGGGGAAAATTTTCCCTTCAAAGTTGAGATCTGACATTCAGGTACTGCCACCGAACATCTTTTTAAGAGAATGGGAGAATGGGGAAAAGCGACAGGAGGgttgtgtgcttttttttttttttttttttttttttttctttttaagtttttctttctttttctttttttatttctttttgtcgTGTTAGTGGTGGTGGTGACGGGTGCTCTCATCTCTGGAAAATTAAACGGTGCTAAGAGTGTCTGAGGAAGGATGCAACTCAACTTTGAGGAAAGTTTTCCGGCTCAAGGCTGGAGTGGAGTAGAGGTTCGAGTTAGAGGAATCGGTGGAGAGCCGGGGAGAGATGTCGCTTGCTTGCAGCTCTCTGTTGCGAGGCTCTGCGCTGGGTGGTTCACAACAAACTGAGAAAGAAAGGGGGAGGAGTCTAAACAAATGGCTTTgggataattattattatttttttcttttttctttccttctttattttttataataagaaACAAAGGCGAAATTTTGGTATGGTATCTGGAGAGCAAAATTGGAAAAgctttttccttttcattttaaattaagttttgtttagttttttcgTTGGACGTGATGTTGTAGAACAGCATCTGTTAACTTGCTGGCTTTGTTGATTTCCTCATTATGATGGGGTCATGCAATCACTAGAAAAGGtccatgagaaaaaaaaacaaaaccaaacttgcataaataaaaacaaaatggatAAAAGCAGGGCATCATAAAGCCGCCACAGATTCCCGCCCATTACCTGAAAACTCTCATGCGCTTGCTACATATAGAGTACAAGAATCTCAAGGAGAGTCAGTCAAGAATATGGTGTTGAGAAAGATCTGATGCGTTTATTTATTGGAAGTTGAAGTCTTAAGAATAAAGATCTATAATAACAGGTGCTGTAATCTACATGTAACGCAATGTGACTGTGAGGTGCAGTACACACAGAAACTATAGGGGGCAGTGCAGTCACTCAGCACTCAGCAGCATTGAAGTGGCTGTGTGAGGTGAAGTTGCCACTGTAGCAAGTGGAGCCTCTAGTGGCCTGAAGTGGAAGCCCCCAGTTAGCAGTTACATTTGCAACACCAACAGACTTTCTGATTGGACAAACGTGAGAAAGTATATCTCTAGCTTAGGGCTGGACAattattaaatatcaataaatatatcgcaatataaaatgtttcagtAACAGTGAAATTAATTTGTCCAAAGTAAAGTAGGTACATCAGTTGTGGATGTTTTTCTGTGGCTTTTCGTTTGTTCATAGAAATTTCAGAATTATATGGTTTCAACAACAGAAATTTAGATACgttgtgatatacatttttaactATATCGTCCAGCCCTACTCTAGCCTAAGTCCAAAAGTTACAGCAGTTGCTAATCTTGGCTAGTCTTAGATAATGGTCATGCTCTGCTTTTAGGACTTCAGTACTGTGCCAAAAATCAGTATGCTTCCACCACagtagggaaaaaaaagtaaactatatttgttttatttttattaatttctccCCCTTCTTAAGTCACCCCTCCtactttgctttgctttttacAAAATCCCAAAAGACTTTTGAGAGTTAAGTTCACGGACTGAACTACTTCCGTTAGAGCCACGTTTGTGAATTTGACCCACTCTGAGCGAAATGCTGaaggaaagtgtgtgtgcaGGCGGGTGAAAAGGCCCAGAATCGCAGTGGCAGTGGCTGTTTTGGCTGTGGAAAGAGGCGGTGAAAGGGCAGACAGGTGAGattctctctgtttgtgtctgtctgtgtttcccACGAGCAGACTGATAAAGAGGCTGCATTGCTCTTGTCTCTTGCTTAACTTGGATGCCAGTGTGCATAGACAGTAGTGTTCTGCTGCggaggtgtgtgtatgtatgtgccTCCTTATTATTAACTGTCCCTCTTCTTGTTTTGTGATTAGTAGTTGTAGTTTTAATCATTACTTTCTGTTCGTTTGATATTTTTGACGTTTATTTTCCTTTCCCACTCATCTGCTGTCTTTATCGATTTGTGTTAGCACCATATTATCtgcatttatttagtttgtacAGTCTTTATTCAGAATGAGGTACACCTTGTTTATCCACTTTCAACTAGTAGATAGAATCCAGTCTTCAAAATCTTCATATTTTGCAGTTTTggttttttgtgcttatttaaagctttgattggttaaagcAGCATTCTTTGATGGTCGCCTTGTCATCCTACTGAAACCAGGAATGTTCATGccttgctgtttttttccattatcaTCACATCTATTTGAATTAACTATTTTTTGCCATCAGTCTAAGAAAGACTGTGGTCAGACTGCCAGCCCACATATGTTTTGTGGGGCATTTTTAGATTGTAACTGGgttgaaaaaaatacacattaaatcaatttgttttattagattGTATCCATATTGATTGATTGTCTGGACAGTCAAAAACTATATTGAAtccatttttgtattattaaattGCATCTGGATTGATTTGTGATGGTCTGAACAGCTAGGAACCACACACAATCTGATTTTAGCCAAATCTAGACTGATCCAGATTAAATTGTGATGGTCTAAACAGCAAGGAACCACACACTCAGGTTTTGGGGGAATGTTAGATTGTGTCAGGATAGCCAGAAACCAcactaaatcagatttttgctaaTAATTGGACTGAAGCCACATTTGGAGGTTATTTGAAATGTGAACATGATCAGATTTAGGATTGTATTCATATTAGTTTTTGATAATCTGAACAGTCAGGAACCACACAACTGTAAGTTTGGTCTttctagattgtatccaaaaagatttttttttatacagcatAAAATCCGATTTGACGCATTtggatgtatttttaaatgtgtacaCAAGTGAATTTGTACAGATGAGATTCAGTGTGGATGCTCTGGATgctcaaattatatatatattttttttcccctcatcatttACACAGAATCTCATACAGAGAGATTTGTGATGTCCAGGCAAGCAAATCTGATCTTATCACTTGCAAATAACAGCATTTCTAATTTGAGAAATTAGTCCGATAtgtctgcagtctgaacacagctttACACCGCTGGACTGGATTTGACCCGTACCTTACTGTGTGCATCAGTTTCATCAGTAACTCCCATTTTTGTTGCctgatgtaaaacaaaaaatgcattcacaGGATTTATAACAATCAATGATAACATCCAGAATGTTCCAATATCTAGGTCATTTTGGTTACCTGCTTGTTTGCTGAATAGAACATAGAGCTGCTTTCATTATTTTCATGGatagtttattattttgtcagtttttggGCTGTCTAAGCTCACCACAGACTTCGGTAAATTCAAGTTTAGAGGATTTCTTATGttgaaaaatttaataaaaatcatcCAACACATTTACAACATGCCTTCCTCATGTTCTCatctttatcattttatttttaataagaatTCTTCCTCTTATAATTGATTGAATTAGTCTTGGTTTCTTTCCTGCAGTGTACTCTGTGATCCAACAATGTTGTACACAGTTAGAGCTCAAGTTATTGATTAAATGATTGATTACATTGGTTTAGTCTTTTCTTGACCCAACACCCACAAGGCCTACAGCAAATACAACAGAACCTGAGGGAACGGCAGATCCCCGCAGTGTGGTTATGTTTATTTGCTAAGATAGAGATGCTTTTTCACACTGTATGTGTTGTATTCACCTGAGAGGAACTCTCGCAGCCGTGAGGTAACTGAGGTGACCGACTGCCTCTCTAATGATGTGAGAAAATCACTATTAAAACCAAAGGATGAATACAAACCGATCGAACGACTGACTGACTAAATACCCGCGGTTCTGTCCCTCACATGAAGGaggataaataatataaatttgaCAATGAAAGATGAATTAGAGGTTATGAATCATATTGAAGATTTTGTTTATTAGGATTTCCCCCTACAGTATGTAATTCCTGCAatgttacataaataaatgttgctTTATTTCA
>XM_022678829.1
ACGTCGCCGTTTCGAGTGGGAGTTGGAGCGAGTGTGCTTTCATTTGAGAAACGTCGTTCTGCTCCGAGTTTAACGGAAAACGGGCTCCGCGCACGGACTCGGGCTGCGTTTCTGCACGTTTTTCAGCGCGCTGGTCTCGGAGGGGGTCGGTTTGGAAGACAGACGCCGCCGGTCACGATACGAATACAGGAGAATATGAGCGTAGAGGCGTACGGGCCGAGCTCGCAGACTCTCACCTTCCTGGACACGGAGGaagcggagctgctgggagccgATACCCAGGGCTCGGAGTTCGAGTTCACCGACTTTACCCTGCCGAGCCAGACCCAGACACAGGGCCAGACCCAGAGCCAGCTGGACAACCAGgtgaaCGGACCTGATGGAGTTTTACAGAACGGAGAGGATGCTGTTGTGAAGACCAGTCAACTTCTGGCTGAACTAAATTttgaggaggatgaggaggacaCCTACTACACCAAGGATCTTCCTGTGCATGCCTGCAGTTATTGTGGGATCCATGATCCTGCCTGTGTGGTTTACTGCAACACCAGCAAGAAGTGGTTCTGCAATGGACGTGGCAACACATCTGGCAGCCACATTGTCAATCATTTGGTGAGGGCCAAATGTAAGGAGGTGACTCTGCATAAAGATGGTCCCCTGGGGGAGACTGTGCTGGAGTGTTACAACTGTGGCTGTCGTAATGTCTTTCTCTTGGGCTTCATCCCAGCCAAGGCTGATTCTGTTGTGGTGCTCCTTTGCAGGCAGCCGTGTGCCAGTCAGAGCAGTCTGAAGGACATTAACTGGGACAGCTCCCAGTGGCAGCCTCTGATCCAGGACCGCTGCTTTCTGTCCTGGCTGGTGAAGATCCCGTCTGAGCAGGAGCAGCTGAGGGCACGTCAGATCACTGCTCAGCAGATCAACAAACTGGAGGAACTCTGGAAGGAAAACCCTACAGCGACGCTTGAGGATTTGGAGAAACCCGGTGTGGACGAGGAGCCTCAGCATGTGCTTCTGCGCTATGAGGACGCCTACCAGTACCAGAACATCTTCGGCCCACTTGTTAAACTGGAGGCAGACTATGACAAGAAGCTCAAAGAGTCCCAGaCCCAAGACAATATAACTGTCAGGTGGGACTTGGGACTGAATAAAAAGAGGATTGCTTATTTCACACTTCCCAAGACGGATTCAGACATGCGCCTGATGCAGGGGGACGAGATCTGCCTGCGCTATAAGGGAGACATGGCTCCTCTCTGGAAGGGGATTGGGCACGTCATCAAGGTCCCTGACAACTATGGAGATGAGATTGCCATTGAACTGAGGagcagtgctggagctcctGTGGAGGTGCCCCACAACTTCCAGGTGGATTTTGTCTGGAAATCCACTTCCTTTGACCGCATGCAGAGTGCCCTGAAAACATTTGCTGTGGACGAGACCTCAGTGTCCGGCTACATCTATCACAAGCTGCTTGGTCATGAGGTGGAGGATGTGATCATtaagtgccagctgcccaagcgCTTCACTGCCCAAGGCCTGCCTGACCTTAACCACTCACAGGTGTATGCAGTGAAGACTGTGCTGCAGCGTCCCCTCAGTTTGATCCAGGGGCCTCCAGGTACTGGCAAGACTGTCACCTCAGCAACCATTGTTTACCACCTGGCCAGACAGGGCAACGGACCAGTGCTGGTGTGTGCTCCCAGTAACATTGCTGTGGATCAGCTGACCGAGAAGATCCATCAGACAGGGCTGAAGGTGGTGCGTCTCTGTGCTAAGAGTCGAGAGGCTATCGACTCTCCTGTGTCTTTCCTTGCCCTGCACAACCAGATCCGCAACATGGAcagTATGCCAGAGTTGCAGAAGCTGCAGCAGCTGAAGGATGAGACTGGAGAGCTGTCCTCTTCAGATGAGAAACGCTACAGAGCTCTGAAACGCACGGCTGAAAGAGAGCTGctcatgaaCGCGGATGTGATCTGCTGTACCTGTGTGGGTGCAGGTGATCCTCGTCTGGCTAAGATGCAGTTCCGCTCCATCCTGATTGATGAGAGCACCCAGGCCACTGAACCAGAGTGCATGGTGCCTGTAGTGCTGGGAGCCAAGCAGcTGATCCTGGTGGGAGACCACTGTCAGTTGGGTCCAGTGGTGATGTGTAAAAAGGCGGCTAAAGCAGGCCTGTCTCAGTCGCTGTTCGAGAGGCTGGTGGTTCTGGGCATCAGGCCCATCCGTCTCCAGGTGCAGTACCGTATGCACCCTGCGCTCAGTGCCTTCCCCTCCAACATCTTCTATGAGGGATCCCTCCAGAACGGAGTCACTGCCGCTGACCGCATCAAGAAGGGCTTTGATTTCCAGTGGCCTCAGCCAGACAAGCCCATGTTCTTCTATGTGACGCAGGGCCAGGAGGAGATTGCGAGCTCAGGCACCTCCTACCTTAACAGGACTGAAGCTGCTAATGTGGAGAAGATCACCACTCGTTTGCTGAAGGCTGGAGCCAAACCTGACCAAATTGGAATCATCACACCGTACGAGGGTCAGCGTTCCTACCTGGTGCAGTACATGCAGTTCAGCGGCTCTCTGCACACCAAACTCTACCAGGAGGTGGAGATAGCCAGCGTGGATGCGTTCCAGGGCCGAGAGAAGGACTTCATCATCCTGTCCTGCGTCAGGGCCAACGAGCACCAGGGCATTGGCTTCCTCAACGACCCACGTCGTCTTAACGTGGCCCTCACCAGGGCCAGGTACGGCGTGATCATTGTGGGAAATCCTAAAGCTCTGTCCAAGCAGCCGCTGTGGAACCACCTGCTGAACTACTACAAGGAGCAGAAGGTTCTGGTGGAGGGACCTCTGAACAACCTGAGAGAAAGTCTTATGCAGTTCAGCAAACCTCGCAAGCTGGTCAACACCATCAACCCTGGAGCTCGGTTCATGAGCACTGCCATGTACGATGCCAGGGAGGCCATGATACCCGGATCTGTGTATGATCGCAGCAACACTGGACGTCCATCTAACATGTACTTCCAGACACACGACCAGATTGGGATGATCGGCGCCGGGCCGAACCCCATGGCCTCCATGAACATCCCTATTCCCTTCAACCTGGTCATGCCTCCCATGCCCCCTCCAAGCTATCTGGGGCAGGTGAACGGCCCTGCTGCAGGCCGTGGAGCGCCAAAGGGTAAGACGGGTGGACGTGGAGGTCGCCAAAGGAACCGTGGCGTGGGAAACCATGGCAGTGGACAGGCCAACATGGCGAACAGCCAGGCAAGCCAGGATCTGGTGTCTCAGCCCTTCTCCCAGGGCCCCCTAACCCAGGGCTACATCACCATGAGCCAGCCCTCACAGATGAGCCAGCCAGGCCTGTCCCAGCCTGAACTCTCTCAGGACAGCTACCTTGGTGATGAGTTCAAGTCTCAGATGGATGTGGCGCTGTCCCAGGATTCCACTTATCAGGGTGAACGGGCTTACCAACATGGAGGAGTGACTGGACTCTCTCAGTACTAGAGTGTTGTTGGAACGGGAGCTAGGCCTATGCTGAGCTTAGTTCATCAGCATTTTAAATCTgggtaaatattaaaaaagaacaaacatgGATGCCCGTTTTCCACTGTTACAACTGAAGCACCATGGTGTGAGAGCAACAGGAGAGAATCAAACCAATCACACGAGtgaaaaaagagggagaaaagcAGGACAGGAAGAGAGAacgagggagtgagtgagtggagggGGGAAAACGACCTCACCACTCGCTAAGGCTGGGgaaggaggagagaggaggagacgCAGCGTAGGAGGGAAGGAGGAGACGATGTGGAAGGGAAAACAAACGAGATCTTCGATCTGCAACTCCGCAAAGTCAGAGGCCCCTCCTGGGGAGCAGGGGGGCCCCTCCCCTGCCTCCTCTCTCTCGCTGCCAGGCTGCAGCCGGCGGCCGCAGACCTCGCTCTGCCACCCGAGACGGAGAGAAGACGAAGTTCTCTTAAAACTACCTGCAAAAAAATACCAAGCTTGCTCTGTCGTCTCCACAAGCTGAAGGAGGGGGTGACGTCtttcaaaaacataaaaatctctataaaaaacGCTTTCAAGCAGCTGATTCTGGGGGAAAATTTTCCCTTCAAAGTTGAGATCTGACATTCAGGTACTGCCACCGAACATCTTTTTAAGAGAATGGGAGAATGGGGAAAAGCGACAGGAGGgttgtgtgcttttttttttttttttttttttttttttctttttaagtttttctttctttttctttttttatttctttttgtcgTGTTAGTGGTGGTGGTGACGGGTGCTCTCATCTCTGGAAAATTAAACGGTGCTAAGAGTGTCTGAGGAAGGATGCAACTCAACTTTGAGGAAAGTTTTCCGGCTCAAGGCTGGAGTGGAGTAGAGGTTCGAGTTAGAGGAATCGGTGGAGAGCCGGGGAGAGATGTCGCTTGCTTGCAGCTCTCTGTTGCGAGGCTCTGCGCTGGGTGGTTCACAACAAACTGAGAAAGAAAGGGGGAGGAGTCTAAACAAATGGCTTTgggataattattattatttttttcttttttctttccttctttattttttataataagaaACAAAGGCGAAATTTTGGTATGGTATCTGGAGAGCAAAATTGGAAAAgctttttccttttcattttaaattaagttttgtttagttttttcgTTGGACGTGATGTTGTAGAACAGCATCTGTTAACTTGCTGGCTTTGTTGATTTCCTCATTATGATGGGGTCATGCAATCACTAGAAAAGGtccatgagaaaaaaaaacaaaaccaaacttgcataaataaaaacaaaatggatAAAAGCAGGGCATCATAAAGCCGCCACAGATTCCCGCCCATTACCTGAAAACTCTCATGCGCTTGCTACATATAGAGTACAAGAATCTCAAGGAGAGTCAGTCAAGAATATGGTGTTGAGAAAGATCTGATGCGTTTATTTATTGGAAGTTGAAGTCTTAAGAATAAAGATCTATAATAACAGGTGCTGTAATCTACATGTAACGCAATGTGACTGTGAGGTGCAGTACACACAGAAACTATAGGGGGCAGTGCAGTCACTCAGCACTCAGCAGCATTGAAGTGGCTGTGTGAGGTGAAGTTGCCACTGTAGCAAGTGGAGCCTCTAGTGGCCTGAAGTGGAAGCCCCCAGTTAGCAGTTACATTTGCAACACCAACAGACTTTCTGATTGGACAAACGTGAGAAAGTATATCTCTAGCTTAGGGCTGGACAattattaaatatcaataaatatatcgcaatataaaatgtttcagtAACAGTGAAATTAATTTGTCCAAAGTAAAGTAGGTACATCAGTTGTGGATGTTTTTCTGTGGCTTTTCGTTTGTTCATAGAAATTTCAGAATTATATGGTTTCAACAACAGAAATTTAGATACgttgtgatatacatttttaactATATCGTCCAGCCCTACTCTAGCCTAAGTCCAAAAGTTACAGCAGTTGCTAATCTTGGCTAGTCTTAGATAATGGTCATGCTCTGCTTTTAGGACTTCAGTACTGTGCCAAAAATCAGTATGCTTCCACCACagtagggaaaaaaaagtaaactatatttgttttatttttattaatttctccCCCTTCTTAAGTCACCCCTCCtactttgctttgctttttacAAAATCCCAAAAGACTTTTGAGAGTTAAGTTCACGGACTGAACTACTTCCGTTAGAGCCACGTTTGTGAATTTGACCCACTCTGAGCGAAATGCTGaaggaaagtgtgtgtgcaGGCGGGTGAAAAGGCCCAGAATCGCAGTGGCAGTGGCTGTTTTGGCTGTGGAAAGAGGCGGTGAAAGGGCAGACAGGTGAGattctctctgtttgtgtctgtctgtgtttcccACGAGCAGACTGATAAAGAGGCTGCATTGCTCTTGTCTCTTGCTTAACTTGGATGCCAGTGTGCATAGACAGTAGTGTTCTGCTGCggaggtgtgtgtatgtatgtgccTCCTTATTATTAACTGTCCCTCTTCTTGTTTTGTGATTAGTAGTTGTAGTTTTAATCATTACTTTCTGTTCGTTTGATATTTTTGACGTTTATTTTCCTTTCCCACTCATCTGCTGTCTTTATCGATTTGTGTTAGCACCATATTATCtgcatttatttagtttgtacAGTCTTTATTCAGAATGAGGTACACCTTGTTTATCCACTTTCAACTAGTAGATAGAATCCAGTCTTCAAAATCTTCATATTTTGCAGTTTTggttttttgtgcttatttaaagctttgattggttaaagcAGCATTCTTTGATGGTCGCCTTGTCATCCTACTGAAACCAGGAATGTTCATGccttgctgtttttttccattatcaTCACATCTATTTGAATTAACTATTTTTTGCCATCAGTCTAAGAAAGACTGTGGTCAGACTGCCAGCCCACATATGTTTTGTGGGGCATTTTTAGATTGTAACTGGgttgaaaaaaatacacattaaatcaatttgttttattagattGTATCCATATTGATTGATTGTCTGGACAGTCAAAAACTATATTGAAtccatttttgtattattaaattGCATCTGGATTGATTTGTGATGGTCTGAACAGCTAGGAACCACACACAATCTGATTTTAGCCAAATCTAGACTGATCCAGATTAAATTGTGATGGTCTAAACAGCAAGGAACCACACACTCAGGTTTTGGGGGAATGTTAGATTGTGTCAGGATAGCCAGAAACCAcactaaatcagatttttgctaaTAATTGGACTGAAGCCACATTTGGAGGTTATTTGAAATGTGAACATGATCAGATTTAGGATTGTATTCATATTAGTTTTTGATAATCTGAACAGTCAGGAACCACACAACTGTAAGTTTGGTCTttctagattgtatccaaaaagatttttttttatacagcatAAAATCCGATTTGACGCATTtggatgtatttttaaatgtgtacaCAAGTGAATTTGTACAGATGAGATTCAGTGTGGATGCTCTGGATgctcaaattatatatatattttttttcccctcatcatttACACAGAATCTCATACAGAGAGATTTGTGATGTCCAGGCAAGCAAATCTGATCTTATCACTTGCAAATAACAGCATTTCTAATTTGAGAAATTAGTCCGATAtgtctgcagtctgaacacagctttACACCGCTGGACTGGATTTGACCCGTACCTTACTGTGTGCATCAGTTTCATCAGTAACTCCCATTTTTGTTGCctgatgtaaaacaaaaaatgcattcacaGGATTTATAACAATCAATGATAACATCCAGAATGTTCCAATATCTAGGTCATTTTGGTTACCTGCTTGTTTGCTGAATAGAACATAGAGCTGCTTTCATTATTTTCATGGatagtttattattttgtcagtttttggGCTGTCTAAGCTCACCACAGACTTCGGTAAATTCAAGTTTAGAGGATTTCTTATGttgaaaaatttaataaaaatcatcCAACACATTTACAACATGCCTTCCTCATGTTCTCatctttatcattttatttttaataagaatTCTTCCTCTTATAATTGATTGAATTAGTCTTGGTTTCTTTCCTGCAGTGTACTCTGTGATCCAACAATGTTGTACACAGTTAGAGCTCAAGTTATTGATTAAATGATTGATTACATTGGTTTAGTCTTTTCTTGACCCAACACCCACAAGGCCTACAGCAAATACAACAGAACCTGAGGGAACGGCAGATCCCCGCAGTGTGGTTATGTTTATTTGCTAAGATAGAGATGCTTTTTCACACTGTATGTGTTGTATTCACCTGAGAGGAACTCTCGCAGCCGTGAGGTAACTGAGGTGACCGACTGCCTCTCTAATGATGTGAGAAAATCACTATTAAAACCAAAGGATGAATACAAACCGATCGAACGACTGACTGACTAAATACCCGCGGTTCTGTCCCTCACATGAAGGaggataaataatataaatttgaCAATGAAAGATGAATTAGAGGTTATGAATCATATTGAAGATTTTGTTTATTAGGATTTCCCCCTACAGTATGTAATTCCTGCAatgttacataaataaatgttgctTTATTTCA

Function

symbol description
upf1 Predicted to enable RNA binding activity and RNA helicase activity. Involved in nuclear-transcribed mRNA catabolic process. Acts upstream of or within chordate embryonic development and nuclear-transcribed mRNA catabolic process, nonsense-mediated decay. Predicted to be active in cytoplasm. Orthologous to human UPF1 (UPF1 RNA helicase and ATPase).

NR:

description
regulator of nonsense transcripts 1

GO:

id name namespace
GO:0000184 nuclear-transcribed mRNA catabolic process, nonsense-mediated decay biological_process
GO:0009790 embryo development biological_process
GO:0005737 cytoplasm cellular_component
GO:0005524 ATP binding molecular_function
GO:0003677 DNA binding molecular_function
GO:0008270 zinc ion binding molecular_function
GO:0004386 helicase activity molecular_function

KEGG:

id description
K14326 UPF1, RENT1; regulator of nonsense transcripts 1

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678828.1 True 8135 mRNA 0.46 24 8495095 8519332
XM_022678829.1 False 8132 mRNA 0.46 24 8495095 8519332

Neighbor

gene id symbol gene type direction distance location
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding upstream 2073 8483546 ~ 8493022 (+)
LOC103032299 NA coding upstream 100472 8386302 ~ 8394623 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding upstream 121909 8369369 ~ 8373186 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding upstream 137401 8329298 ~ 8357694 (+)
LOC111194453 NA coding upstream 195512 8298244 ~ 8299583 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding downstream 2818 8522150 ~ 8580869 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding downstream 148590 8667922 ~ 8680860 (+)
polr2e polr2e,polr2eb,LOC107669821 coding downstream 258328 8777660 ~ 8783198 (+)
LOC103025531 LOC108427106 coding downstream 346239 8865571 ~ 8878804 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 715349 9234681 ~ 9254117 (+)
G150297 NA non-coding upstream 57693 8436595 ~ 8437402 (+)
G150269 cplx4c,LOC108427184 non-coding upstream 170447 8313027 ~ 8324648 (+)
G150248 NA non-coding upstream 185661 8257912 ~ 8309434 (+)
G150292 NA non-coding downstream 63112 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 72809 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 120559 8639891 ~ 8640174 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding downstream 123036 8642368 ~ 8647191 (+)
G150469 NA non-coding downstream 366456 8885788 ~ 8886029 (+)
G150131 NA other upstream 615794 7874640 ~ 7879301 (+)
G150099 NA other upstream 689841 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1243729 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1547159 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1908726 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 129498 8648830 ~ 8656708 (+)
G150579 NA other downstream 1036327 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1331886 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1622792 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1672188 10191520 ~ 10279830 (+)

Expression


Co-expression Network