LOC103031660 (homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283)


Basic Information

Item Value
gene id LOC103031660
gene name homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8522150 ~ 8580869 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678830.1
GCTTCGGCTGAACACGACGGTGAAGCCGGCCAGCGAGTTGGGAAGTCCCGCTGCGGAGCTGCGGAGCGAGCGGGCAGAGCGGGGGTCCAGCTCCGCCGGAGCCTCCAACGGGGGATTTACCACTGAAGCCGGCGGGGGGAGCCGAGGAGCCGGGGGTCTGTGCAGCCGTGCAGCTGCTGACCGCAAGGTTACTGAAGTGCAgccaaagagagaaagaagagctGGAGAAGAAGTCCTCACAGTCCCCCAAACATGCGCCCTCAGAGCCGGGGGAGTTCCGCTGCGCTACCTGTGAGTCTGAGGGTCAttagagaagcagcagcagcggcgtcCAGCTGTGCGGACCTTCTCCTCCACTgaagataaagaagaagaagctacAGGAGGAGTGCGGGGCTCTGCGTTTCTCTGCAGCTTCACTGAGGTGCTGGTGGTCCCTCTctgagaggaggaagaggaggaggaggggggctAGGGAAGAAGATAAAGGAGTTctgaaagagataaagagatatcTACCTGTCTTTCTACTGTTTTCAACGAAATGGGaaaagggTCTTCACCTGTCCAGTAAGAATGTTTCCGACCCACAGAGAGAGGGAGCAGCCCATTTTCAGCTCTCGAGCTCATGTGTTCCAGATCGATCCAGCCACTAAACGTAACTGGATTCCAGCCAGCAAGCATGCTGTCACCGTCTCCTTCTTCTACGACGCCAACCGGCACGCCTACCGCATTATCAGTGTGGGGGGCACCAAGGCCATCATTAACAGCACAATCACACCCAACATGACATTCACCAAGACGTCACAGAAGTTTGGCCAGTGGGCAGACAGCAGGGCGAACACTGTGTACGGCCTGGGCTTCGCCACCGAGCAGCAGCTTCATCAGTTTTCCGAGCGCTTCAAAGAAGTAAAGGAAGCCGCTCGTCTGGCCAGAGAGAAATCACAGGATAAGCTGGAAATGGTCAACCCTGCCCTGAACATCGCAGCCCCACAGTTCTCTCAGgacTTGTCAGACGAGCTGCAGTCCCCACCGGTGATGTGTGTGAACGGGCCAGATGACAAGCTGTTCCGCAGCCAGAGTGCAGACATCACGCTTTCCTCAGAGAAAGAACGCATCAAAAAGATGCTGTCGGAGGGCTCGATCTGTGAGATGAACCTGGAGGCCGAACTGTTCACCCTGCAGGACAGCAATGCTAAACTGGTGGCAGCGCTGCATGAAGCTAATGCCAACGTGGATCAGTGGAAGAAGCAGTTGGCGGCCTATCAGGAGGAGACGGAGAGGCTGAGGGACCAGGTGGCAGATTTGGAGGCTCATGGAGGTCAGGGCCCCAGTGACATGCTGAAGGACGAGCTCACTCAGTCTCTGGAGGAACTGGAGGCCTTACTCAGAGCTAAAGATGAGGAAATACGCATTCTTCAAGCCAAGAAGTCAGACTTTCATGAGATGgagcaggagagagaagaaGCCATTCACAGACTACAGGAGCTGGAGATGCGTAATGTGGATCTGGAGAGGAGGGTGCAGAACTCCGAGCAGAGTCTGGCCTCCACTCTGGAGGATCGGGATCGCACGGATAGCGAGATCCAGAGGGTCGTCCAGATCCTCGACGTCAAGATCTTCGACCTCAATGACCTCCGTCAGAGCCTGGTCAAACTGCTGGAGAAATAGTGGAGTGAGGTGACCTTCTGACTGACCCTGAGGAGACGGAGAGAGACGCTACGGCGTCTCGGCCTCGGCTCAGCGGCCGGGCTCCCGGTATAAACGGCCCGCGTTCAGGAGGTGCCACATTTCAGCACGTAGAGTAGCTACGCTTTTCTAATAGAGAACAGGGAACAGGGCTAGGATGTGCTAGTTAatcatacacactctctcagtTTTCCGTTTTCAGGTTTCTTTGGTGTTTTCTCTCCGTTTTTCAGTATGATGACAGTTTCTGTTAACAGATTAGCAATAACTCTGTTTCTCTGAGTTTCTCTTGAGTTGAGTTGTTCAGTATTaggttaataataatgataataataattgagGGGAAAGCACTATTTTTGATACAGCGTGTGGAGCATGGCTGTAgtggaatatacagtataagcaGAGATGTATTATAAgtaacatattatatataagttgtgttatatattataagttATAGATGTAAACGTAAACACGTAAATGCATATTTACACAAAACAGAGGGTAGAATTAACCAGTATGGTActctttttaatt
>XM_022678831.1
GCTTCGGCTGAACACGACGGTGAAGCCGGCCAGCGAGTTGGGAAGTCCCGCTGCGGAGCTGCGGAGCGAGCGGGCAGAGCGGGGGTCCAGCTCCGCCGGAGCCTCCAACGGGGGATTTACCACTGAAGCCGGCGGGGGGAGCCGAGGAGCCGGGGGTCTGTGCAGCCGTGCAGCTGCTGACCGCAAGGTTACTGAAGTGCAgccaaagagagaaagaagagctGGAGAAGAAGTCCTCACAGTCCCCCAAACATGCGCCCTCAGAGCCGGGGGAGTTCCGCTGCGCTACCTGTGAGTCTGAGGGTCAttagagaagcagcagcagcggcgtcCAGCTGTGCGGACCTTCTCCTCCACTgaagataaagaagaagaagctacAGGAGGAGTGCGGGGCTCTGCGTTTCTCTGCAGCTTCACTGAGGTGCTGGTGGTCCCTCTctgagaggaggaagaggaggaggaggggggctAGGGAAGAAGATAAAGGAGTTctgaaagagataaagagatatcTACCTGTCTTTCTACTGTTTTCAACGAAATGGGaaaagggTCTTCACCTGTCCAGTAAGAATGTTTCCGACCCACAGAGAGAGGGAGCAGCCCATTTTCAGCTCTCGAGCTCATGTGTTCCAGATCGATCCAGCCACTAAACGTAACTGGATTCCAGCCAGCAAGCATGCTGTCACCGTCTCCTTCTTCTACGACGCCAACCGGCACGCCTACCGCATTATCAGTGTGGGGGGCACCAAGGCCATCATTAACAGCACAATCACACCCAACATGACATTCACCAAGACGTCACAGAAGTTTGGCCAGTGGGCAGACAGCAGGGCGAACACTGTGTACGGCCTGGGCTTCGCCACCGAGCAGCAGCTTCATCAGTTTTCCGAGCGCTTCAAAGAAGTAAAGGAAGCCGCTCGTCTGGCCAGAGAGAAATCACAGGATAAGCTGGAAATGGTCAACCCTGCCCTGAACATCGCAGCCCCACAGgacTTGTCAGACGAGCTGCAGTCCCCACCGGTGATGTGTGTGAACGGGCCAGATGACAAGCTGTTCCGCAGCCAGAGTGCAGACATCACGCTTTCCTCAGAGAAAGAACGCATCAAAAAGATGCTGTCGGAGGGCTCGATCTGTGAGATGAACCTGGAGGCCGAACTGTTCACCCTGCAGGACAGCAATGCTAAACTGGTGGCAGCGCTGCATGAAGCTAATGCCAACGTGGATCAGTGGAAGAAGCAGTTGGCGGCCTATCAGGAGGAGACGGAGAGGCTGAGGGACCAGGTGGCAGATTTGGAGGCTCATGGAGGTCAGGGCCCCAGTGACATGCTGAAGGACGAGCTCACTCAGTCTCTGGAGGAACTGGAGGCCTTACTCAGAGCTAAAGATGAGGAAATACGCATTCTTCAAGCCAAGAAGTCAGACTTTCATGAGATGgagcaggagagagaagaaGCCATTCACAGACTACAGGAGCTGGAGATGCGTAATGTGGATCTGGAGAGGAGGGTGCAGAACTCCGAGCAGAGTCTGGCCTCCACTCTGGAGGATCGGGATCGCACGGATAGCGAGATCCAGAGGGTCGTCCAGATCCTCGACGTCAAGATCTTCGACCTCAATGACCTCCGTCAGAGCCTGGTCAAACTGCTGGAGAAATAGTGGAGTGAGGTGACCTTCTGACTGACCCTGAGGAGACGGAGAGAGACGCTACGGCGTCTCGGCCTCGGCTCAGCGGCCGGGCTCCCGGTATAAACGGCCCGCGTTCAGGAGGTGCCACATTTCAGCACGTAGAGTAGCTACGCTTTTCTAATAGAGAACAGGGAACAGGGCTAGGATGTGCTAGTTAatcatacacactctctcagtTTTCCGTTTTCAGGTTTCTTTGGTGTTTTCTCTCCGTTTTTCAGTATGATGACAGTTTCTGTTAACAGATTAGCAATAACTCTGTTTCTCTGAGTTTCTCTTGAGTTGAGTTGTTCAGTATTaggttaataataatgataataataattgagGGGAAAGCACTATTTTTGATACAGCGTGTGGAGCATGGCTGTAgtggaatatacagtataagcaGAGATGTATTATAAgtaacatattatatataagttgtgttatatattataagttATAGATGTAAACGTAAACACGTAAATGCATATTTACACAAAACAGAGGGTAGAATTAACCAGTATGGTActctttttaatt

Function

symbol description
homer3 Enables identical protein binding activity. Involved in negative regulation of calcineurin-NFAT signaling cascade and negative regulation of interleukin-2 production. Predicted to be located in basal part of cell. Predicted to be active in several cellular components, including dendrite; glutamatergic synapse; and postsynaptic density.

NR:

description
PREDICTED: homer protein homolog 3-like isoform X1

GO: NA

KEGG:

id description
K15010 HOMER; homer

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678830.1 True 2229 mRNA 0.52 11 8522150 8580869
XM_022678831.1 False 2220 mRNA 0.52 10 8522150 8580869

Neighbor

gene id symbol gene type direction distance location
upf1 upf1,LOC107724030,LOC107696277 coding upstream 2818 8495095 ~ 8519332 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding upstream 29128 8483546 ~ 8493022 (+)
LOC103032299 NA coding upstream 127527 8386302 ~ 8394623 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding upstream 148964 8369369 ~ 8373186 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding upstream 164456 8329298 ~ 8357694 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding downstream 87053 8667922 ~ 8680860 (+)
polr2e polr2e,polr2eb,LOC107669821 coding downstream 196791 8777660 ~ 8783198 (+)
LOC103025531 LOC108427106 coding downstream 284702 8865571 ~ 8878804 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 653812 9234681 ~ 9254117 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding downstream 697596 9278465 ~ 9359957 (+)
G150297 NA non-coding upstream 84748 8436595 ~ 8437402 (+)
G150269 cplx4c,LOC108427184 non-coding upstream 197502 8313027 ~ 8324648 (+)
G150248 NA non-coding upstream 212716 8257912 ~ 8309434 (+)
G150292 NA non-coding downstream 1575 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 11272 8592141 ~ 8592375 (+)
G150317 NA non-coding downstream 59022 8639891 ~ 8640174 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding downstream 61499 8642368 ~ 8647191 (+)
G150469 NA non-coding downstream 304919 8885788 ~ 8886029 (+)
G150131 NA other upstream 642849 7874640 ~ 7879301 (+)
G150099 NA other upstream 716896 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1270784 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1574214 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1935781 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 67961 8648830 ~ 8656708 (+)
G150579 NA other downstream 974790 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1270349 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1561255 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1610651 10191520 ~ 10279830 (+)

Expression


Co-expression Network