polr2e (polr2e,polr2eb,LOC107669821)



Basic Information


Item Value
gene id polr2e
gene name polr2e,polr2eb,LOC107669821
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8777660 ~ 8783198 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XM_022678846.1
ATCTCTGGCAAGTAACTGGACGCCCGTGTTTGGGTCCTTCTGTGGCTGGTGGTCACGTGGTGTGATTGTTCGgaagctgagtgtgtgtgtgtagtgtgtgtagtgtgtggatcGGGAGAAATATCAGTGTATTATTGAGTAAATAAGGTTAATAAAGAGGTTGTTAGTCTCAGATCGCGGTGATGGATGATGAAGAGGAGACCTACCGCCTGTGGAAGATCAGGAAGACTATAATGCAGCTTTGCCATGATCGAGGATACTTGGTGACGCAGGATGAGTTGGATCAGACCCTGGATGAGTTTAAAAGCCAGTTTGGAGACAAACCGAGCGAGGGCCGACCCAGGAGGACAGATCTCACAGTGCTGGTGGCTCACAATGACGATCCGACCGACCAGATGTTCGTCTTCTTTCCTGagGAGCCCAAAGTGGGCATTAAGACTATTAAGATGTACTGCCAGCGAATGCAGGAGGAGAACATCACCCGCGCCATTATTGTAGTCCAGATGGGCATGACTCCATCTGCCAAACAGTCTTTGGTGGACATGGCACCAAAGTATATTCTGGAGCAGTTTCTTCAGCAGGAGCTTCTCATCAACATCACAGAGCACGAGCTTGTTCCTGAACACATAGTGATGACTAAAGAAGAAGTGACGGAGCTGCTCGCGAGATATAAGCTGAAGGAGAGCCAGTTACCCAGGATTCAGGCTGGAGATCCAGTGGCCCGATATTTTGGAATAAAGAGAGGACAGGTGGTGAAGATCATCAGACCTAGTGAAACTGCAGGTCGATATATTACATACAGACTTGTGCAGTAATGCTAATGTGaATTTCAGTCAAGAATTTGGATACTCGTCTCAGAGCTGGAGGTGAAATCAGAAGACCCCatatgttttcagttttaagaaagaagactaaaattTTGCTGCAGTTTATCTTTTAAGATaactaaaatcattttttttattaactgttcAATTAAAGTTGTATTTGTAAAATACAGATTTGGctcttttattatactgtaatgtCTGGAATCCTGTAGAACTCAATTAAACAGGCAGATAAAGCTCAGTAGTGCTGGGTTTGGACACATCA

Function


symbol description
polr2eb Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Predicted to act upstream of or within transcription, DNA-templated. Predicted to be located in nucleus. Predicted to be part of RNA polymerase I complex; RNA polymerase II, core complex; and RNA polymerase III complex. Orthologous to human POLR2E (RNA polymerase II, I and III subunit E).
polr2e Predicted to enable DNA binding activity. Predicted to contribute to DNA-directed 5'-3' RNA polymerase activity. Involved in transcription by RNA polymerase II. Located in nucleoplasm. Part of RNA polymerase II, core complex.

NR:

description
PREDICTED: DNA-directed RNA polymerases I, II, and III subunit RPABC1

GO:

id name namespace
GO:0006351 transcription, DNA-templated biological_process
GO:0005665 RNA polymerase II, core complex cellular_component
GO:0005666 RNA polymerase III complex cellular_component
GO:0005736 RNA polymerase I complex cellular_component
GO:0003677 DNA binding molecular_function
GO:0001054 RNA polymerase I activity molecular_function
GO:0001055 RNA polymerase II activity molecular_function
GO:0001056 RNA polymerase III activity molecular_function

KEGG:

id description
K03013 RPB5, POLR2E; DNA-directed RNA polymerases I, II, and III subunit RPABC1

RNA


RNA id representative length rna type GC content exon number start site end site
XM_022678846.1 True 1095 mRNA 0.44 8 8777660 8783198

Neighbor


gene id symbol gene type direction distance location
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding upstream 96800 8667922 ~ 8680860 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding upstream 196791 8522150 ~ 8580869 (+)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 258328 8495095 ~ 8519332 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding upstream 284638 8483546 ~ 8493022 (+)
LOC103032299 NA coding upstream 383037 8386302 ~ 8394623 (+)
LOC103025531 LOC108427106 coding downstream 82373 8865571 ~ 8878804 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 451483 9234681 ~ 9254117 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding downstream 495267 9278465 ~ 9359957 (+)
LOC103028184 LOC108427103 coding downstream 742135 9525333 ~ 9584009 (+)
LOC111194519 NA coding downstream 1026128 9809326 ~ 9819170 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding upstream 130469 8642368 ~ 8647191 (+)
G150317 NA non-coding upstream 137486 8639891 ~ 8640174 (+)
G150305 NA non-coding upstream 185285 8592141 ~ 8592375 (+)
G150292 NA non-coding upstream 192604 8582444 ~ 8585056 (+)
G150297 NA non-coding upstream 340258 8436595 ~ 8437402 (+)
G150469 NA non-coding downstream 102590 8885788 ~ 8886029 (+)
LOC103029650 NA non-coding downstream 321679 9104877 ~ 9113656 (+)
G150529 NA non-coding downstream 322119 9105317 ~ 9105734 (+)
LOC111194515 NA non-coding downstream 338830 9122028 ~ 9164242 (+)
G150526 NA non-coding downstream 345699 9128897 ~ 9188112 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 120952 8648830 ~ 8656708 (+)
G150131 NA other upstream 898359 7874640 ~ 7879301 (+)
G150099 NA other upstream 972406 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1526294 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1829724 6935341 ~ 6947936 (+)
G150579 NA other downstream 772461 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1068020 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1358926 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1408322 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 1537071 10320269 ~ 10363375 (+)

Expression



Co-expression Network