LOC111194519


Basic Information

Item Value
gene id LOC111194519
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9809326 ~ 9819170 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678868.1
gtgtggcacGTATGCCTGGGGGTGTGTTTTTAACACAAGGACCACAGCATCAGAGCTCGGCCCGACGGTTCCTCCGTGCTGAACCCCTCCTCATGTCCAGGCAGGCGTAGGATGGATGAGAGCACGTTTGAGATGTTTGACGACGAGCTCGGGACACCATTACAAGATGTTCCTCCACAAAAATCTTTTAGAACAGGTCGCCGGACTGGGACAGaGACATACGTTCAAAGACGAGTACGAGAGGAACCTCCAATCGTTCAGCAGATCCCAAAAGCTGTTCCGCGTGAAGCCCCCATCTCAAGAGCCATGCCACTACGCAAAGCCCTGTCCATTCAGAACATTGCCCAGATTGATATACCATGGGAGGGAGTGACGCTTAACCGCTGCCTCATCATCGCAATAACCATACTGGTCGTCACCTCAGGTCTCCAGAGACTAGGAGAGGCCATACGAGGCCGCAAAGACGGAAGTGATGTAGACGCCATCGATACTGCACTTAATATGAGACACACTGCAATCAGGAAGGGGCGACTACCACCACCTCAGCCTGAGACCTCTCTATGGGACACCTTCTGGTCGTGGGTCAGCGATGATGATGACGACGATGATAAACGAGGCAAACGGGGCAAATCCAGGAAAGGTGCTCAGGAGAGCTCGAACAGAGGCCTCAGACACAAAGCCATCCCAAACAGAAACCTGCTGAAGGGAAGACAAGACAGATTTAAAGCACGGAGAGAAAAAGCAAGAGAGCAGGACGAAGAGGAGAcgaaagaaagagtgaaaggaCAAAGAGCGAAGGAGAAAAGACTGAAACAGGAGAAGCTTGAGGAAGAGGAgcaggagaaacagaagacgGAGAAGGAAGAGAAGATACCCAAGAAGAAATCAAAAGAAGGCAAGAAAAAAGACAAGGATAGGAAAGAGtaaatatagtgatatataaGGGAATAAGGGAACGATGGGATGCCAGGAAGACCCTGAAAAAGAGTGGAGGGAACTAGTTATTGTAAGGAGATGTCTATGAGTCTATGACAGGTGCTACTAAAGGTTTCTCTCAGGAAGACTTGGAAGCTTAAGTTGAGGAGCAGGTCTGAATGGGTAAATGCACTAATATTAGCTTGATTAGATTAGCCAACCCTAGAATTGCTATTTACTTATTAATCCtaatgcattacattacattacattacgtctatttacaatagtgaagtaataaaaatacaataatgcaGAAACTGTTAGAAATTACTGTATGTGATTTATTTGGTAACCATTAGTTAGCATTTCTTTTGTGGAGTCCCACATTGTTCTACTTTGGCTCCTATGAAACTAGTTACATGTTTTGTCTATTAAGGAAACaccagtgttttaaaataaaactagctCTTATGCTA

Function

GO:

id name namespace
GO:0008015 blood circulation biological_process
GO:0003013 circulatory system process biological_process
GO:0003015 heart process biological_process
GO:0060047 heart contraction biological_process
GO:0060048 cardiac muscle contraction biological_process

KEGG:

id description
ko05410 Hypertrophic cardiomyopathy
ko05414 Dilated cardiomyopathy

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678868.1 True 1394 mRNA 0.45 7 9809326 9819170

Neighbor

gene id symbol gene type direction distance location
LOC103028184 LOC108427103 coding upstream 225317 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 449369 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 555209 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 930522 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 1026128 8777660 ~ 8783198 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 10933 9830103 ~ 9837255 (+)
LOC103025670 NA coding downstream 54796 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 80158 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 97284 9916454 ~ 9917473 (+)
LOC103032638 LOC101168737 coding downstream 223556 10042726 ~ 10049750 (+)
G150669 NA non-coding upstream 18731 9787468 ~ 9790595 (+)
G150663 NA non-coding upstream 43878 9765071 ~ 9765448 (+)
G150586 NA non-coding upstream 142039 9659060 ~ 9667287 (+)
G150580 NA non-coding upstream 209277 9599460 ~ 9600049 (+)
LOC111194518 NA non-coding upstream 296771 9509854 ~ 9512555 (+)
G150671 NA non-coding downstream 1416 9820586 ~ 9820791 (+)
G150673 LOC107552671 non-coding downstream 35964 9855134 ~ 9857155 (+)
G150681 NA non-coding downstream 50529 9869699 ~ 9871616 (+)
G150704 NA non-coding downstream 136296 9955466 ~ 10016966 (+)
G150705 NA non-coding downstream 171304 9990474 ~ 9998264 (+)
G150579 NA other upstream 242229 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1152618 8648830 ~ 8656708 (+)
G150131 NA other upstream 1930025 7874640 ~ 7879301 (+)
G150099 NA other upstream 2004072 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2557960 7249165 ~ 7251366 (+)
G150674 tpgs1 other downstream 32048 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 322954 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 372350 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 501099 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 590623 10409793 ~ 10442243 (+)

Expression


Co-expression Network