plekhj1 (plekhj1,LOC107671816,LOC107696566,LOC107750216)


Basic Information

Item Value
gene id plekhj1
gene name plekhj1,LOC107671816,LOC107696566,LOC107750216
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9830103 ~ 9837255 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678871.1
CGGGGCttgtgtacagtagtgaaaACAGGGTATTAAACAgtgaagcagcagcaggagaagaaggaggaggaggaggatctgAGCAGGTTTCTCAGCgggtttcagttctgttttcAGTCTCACAGGCAGGAGAAACAGCTCAGAATTAGAGAGCAGGAGGAGAAGCAGCTGTAGACATGGCTTATAGTTAGTTAAAAGCCCAGTTACaccagtaaataaatgaaacattatGATCTGGACTGAACTGGGCGGCCAGACTGGACCTTCATCAGGCTGAATCATCATTCAGGATGTTATATAGAGATTTTAATCTATTAAACGTTTAATCTGAGAGTAAGAGGAGGTTAAAATGCGGTTTAATGAGAAGGAGCTGGTGTTCCTGAGCAGACAGCCCTCAGAGAGAGCGGCTGAGCTGGGGATGAAGGGACCCAAGAAAGGCGATGTCATGAAGAGACGGCTGGTGAAGCTTATAGTGAATTTCCTGTTTTACTTTCGCAcagatgaggaggagccAATTGGAGCCTTACTGCTGGAACAGTGTCGAGTTGAGAGGGAGGATAATATGGCCTTCTCCATTGCTTTTCTGGACGAGGCTGAGAGAAAGTACCTGTTTGAATGTGACTCTCAGGAGCAGTGCCTTGAGTGGATAGACGCCATTGTCAAAGCTAGCTATGAGTTCATGCGCAAGAACCTCGTCTTCTACCGTACTGAGATCCATCGACTCACTGGCAAGGACCCGTTGGAGCAGTACGGGATTTCAGACGAGACTCGCTTCCAGGTCAACAGTGGGTTTCCTCCTCTGCCCCCTCCGCCCACATAACCCAGCCCAGTGAGTCAGCCCAGAATCCACCCGGCTTGCTTACGTCAAGAGTTTTCAATACGAACTGAGAAACTGCTGTctttatcttatatatatatatttttttctgactaTCTAGGCATTTTTAATGTACCATGGTCATTTCACTTTTCCCCCacttgagtttgtgtgtgtttttgattttttttttattgactgtatGTTGTATGTGGTGGTGTGTTGGTGGCTGTGTGTTGGTTTTAAGCGCAATGGCACTGTTATGAATGTTAGCTGAGAATGAGCCAGTAGCGGTGCATTTCAATGCATTTATGCATATTTTATGATCCATGTAGCCTTTATACGTTGTCAGAACATATGACCAAATTTGTAACGGCCCCTGTTTTGTGGTTTCACTTCACAGAACTGCCCCAGTTTTGCCTTTAGACACGGTTTTAGACACAACTTCCCTTTAATCGTGCTTCATTTCACATGCCATCAAACTTAGCCTTCACTGCTTAGTTTTAggcattttattgattttaaatagatttttttatagcTTTAATAAGTTAGCAGAACCAAGGCCTTGTTCAGTAGGGCGTTTTTCTTGGTTGTTCTAATTTGCACTCTCTTTTagtaattttaatataacacGTGCACTGCTATTAATACATCATGAAGACCTACTGCAAGACCAACACTGGCATGTCTGTTTCTGTTAATGGATCAGGAAGATTAGGCAGTGTAAGTGTTAATATTGCAGTCATTTGCATATGTTGGGCATTACTAGCGAAACTAAGAGCAACCATAGAGTCTCTCTGGCATTTACCAATATAATCTCAAGTTTCCAGTGGTGCAGAGCCTGGTCTTAGTGTACTTAACATGTATAGGAatagttcagtaaaaaaaaaaaaaacactttgaggggaaaaaagtatttggacacacatatattacatatattaattGTTACACCTACAGAAAGTTTTAGATATAGCATCCCATTCTAAGTTACAAAAATGCAATATGAGGCTGTTAAAATCCCAGATATTGAtgtaaaaacactataaattataaatatattaatgttagTCACATTGTCCTAGGAGTCATTAGTGTGGAATCGCTCCCCCTTTGCAGCTGTAACAGCCAAGTATGGAGCTCTGAATGTTCAGCAGAGCATTTAAGAGAATttaattttctgtgctacaagtTCAGTCggctttttagatttttatatatatatatatatacacttgcTGCAGAAGAACTGAATTAAATACCTGCATTTTAAGGCCCCTGGAAACCcattttttgtataatattaaaattaa

Function

symbol description
plekhj1 Predicted to be involved in endosome organization; receptor recycling; and retrograde transport, endosome to Golgi. Predicted to be active in early endosome; recycling endosome; and trans-Golgi network. Orthologous to human PLEKHJ1 (pleckstrin homology domain containing J1).

NR:

description
pleckstrin homology domain-containing family J member 1

GO: NA

KEGG:

id description
K24021 PLEKHJ; pleckstrin homology domain-containing family J

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678871.1 True 2133 mRNA 0.40 6 9830103 9837255

Neighbor

gene id symbol gene type direction distance location
LOC111194519 NA coding upstream 10933 9809326 ~ 9819170 (+)
LOC103028184 LOC108427103 coding upstream 246094 9525333 ~ 9584009 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding upstream 470146 9278465 ~ 9359957 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding upstream 575986 9234681 ~ 9254117 (+)
LOC103025531 LOC108427106 coding upstream 951299 8865571 ~ 8878804 (+)
LOC103025670 NA coding downstream 36711 9873966 ~ 9882127 (+)
LOC111194523 NA coding downstream 62073 9899328 ~ 9926814 (+)
LOC111194611 NA coding downstream 79199 9916454 ~ 9917473 (+)
LOC103032638 LOC101168737 coding downstream 205471 10042726 ~ 10049750 (+)
LOC111194527 NA coding downstream 214065 10051320 ~ 10054422 (+)
G150671 NA non-coding upstream 9312 9820586 ~ 9820791 (+)
G150669 NA non-coding upstream 39508 9787468 ~ 9790595 (+)
G150663 NA non-coding upstream 64655 9765071 ~ 9765448 (+)
G150586 NA non-coding upstream 162816 9659060 ~ 9667287 (+)
G150580 NA non-coding upstream 230054 9599460 ~ 9600049 (+)
G150673 LOC107552671 non-coding downstream 17879 9855134 ~ 9857155 (+)
G150681 NA non-coding downstream 32444 9869699 ~ 9871616 (+)
G150704 NA non-coding downstream 118211 9955466 ~ 10016966 (+)
G150705 NA non-coding downstream 153219 9990474 ~ 9998264 (+)
G150698 NA non-coding downstream 172995 10010250 ~ 10032076 (+)
G150579 NA other upstream 263006 9555659 ~ 9567097 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 1173395 8648830 ~ 8656708 (+)
G150131 NA other upstream 1950802 7874640 ~ 7879301 (+)
G150099 NA other upstream 2024849 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 2578737 7249165 ~ 7251366 (+)
G150674 tpgs1 other downstream 13963 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 304869 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 354265 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 483014 10320269 ~ 10363375 (+)
LOC111194616 NA other downstream 572538 10409793 ~ 10442243 (+)

Expression


Co-expression Network