LOC103021908 (tpm4b,tpm4,LOC108427191,LOC107696831,LOC105022485,LOC108280645)


Basic Information

Item Value
gene id LOC103021908
gene name tpm4b,tpm4,LOC108427191,LOC107696831,LOC105022485,LOC108280645
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 10558114 ~ 10583740 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022678904.1
CTCAGGTTTAAACCCTCCACAGCAGTGTAGCATTTCAGTCTGAGTGGCCCCTctccccttctctttctctcaaccacttctctctctctccctcactctctctctgtctttctatcaCTCCTCATCTCTTTTCTTCTAACAGAGAAAGACACTGTCGTCTCTGTTGTCAGTCTACCTGAGAGAAGCAGTCTCAATCACTTTATCCCAGACTACACTCCATTTTTCTGAAGAGAGTCCGTCCATCTACAGGCAGCTGAAATGGAGGCcatcaagaagaagatgcaGATGCTGAAGCTGGACAAGGAGAACGCCCTCGACAGAGCAGAGCAGGCTGAGTCTGACAAGAAAGCAGCAGAGGACAAgtggaagcagCTAGAGGATGAGCTGCTGGGGCTGCAGAAGAAGCTGAAGGCAACAGAGGATGAGGTGGACAAATACTCAGAGGCTCTCAAAGACGCCCAGGAGAAACTGGAACTGTCAGAGAAGAAAGCCACAGAAgcagaAGGTGAGGTGGCTGCTCTGAACCGCAGGATTCAGCTGATTGAGGAGGAGCTGGACCGCGCTCAGGAGAGATTGGCCACTGCGCTCCAGAAGCTCGAGGAAGCAGAGAAACAAGCAGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACCGGGCAACGAAAGACGAGGAGAAGATGGTGATGCAGGAGTTGCAGCTGAAGGAGGCCAAACAGGTTGCTGAGGACTCCGATCGCAAGTACGATGAGGTAGCTCGTAAGCTGGTCATTCTGGAAGGTGAACTGGAAAAAGCAGAGGAGAGAGCGGAGATCTCTGAGCTCAAAGGAGGTGACTTAGAGGAAGAGCTCAAGAACGTAACAAACACCCTAAAGTCTCTTGAAGCCCAGTCAGAGAAGtacGCAGACAAAGAAGATCGATATGAGGAGGAGATCAAAGTCCTCACTGACAGACTGAAAGAGACGGAAACCCGTGCTGAGTTTGCAGAGAAGACCATGGCCAAACTGGAAAAGACCATTGATGACCTCGAGGATGAACTGTACGCTCAAAAGCTGAGGGTGAAGGCCATTACCGAGGAGCTGGATCTCGCCCTAAATGACATGACCTCCATGTAGATGAACCTCCCTCACTATCTCTTTTATCGCCAGGCAGCTGCCGGTGGAAGATCTAAGTGCCTTAAACCCCCCCTCATCTATTTTTTCCACTATAAAATATGCATAGCGAAGATGCAGGTGCTGCTGAAGCATTAAGAAGTGAGGCTGGCGACCCAGTTCACATCTTACTGTGCCTCTGTTCTTCTGTTCCTCATCTTTTCTTCTTCCTGATTTCTTTTTCTGTGCCTGAAATCTGCTACCTTTATGTTCCGGCTTAAatgataaagttttaataaagttattattagTAAATCTAA
>XM_022678905.1
CTCAGGTTTAAACCCTCCACAGCAGTGTAGCATTTCAGTCTGAGTGGCCCCTctccccttctctttctctcaaccacttctctctctctccctcactctctctctgtctttctatcaCTCCTCATCTCTTTTCTTCTAACAGAGAAAGACACTGTCGTCTCTGTTGTCAGTCTACCTGAGAGAAGCAGTCTCAATCACTTTATCCCAGACTACACTCCATTTTTCTGAAGAGAGTCCGTCCATCTACAGGCAGCTGAAATGGAGGCcatcaagaagaagatgcaGATGCTGAAGCTGGACAAGGAGAACGCCCTCGACAGAGCAGAGCAGGCTGAGTCTGACAAGAAAGCAGCAGAGGACAAgtggaagcagCTAGAGGATGAGCTGCTGGGGCTGCAGAAGAAGCTGAAGGCAACAGAGGATGAGGTGGACAAATACTCAGAGGCTCTCAAAGACGCCCAGGAGAAACTGGAACTGTCAGAGAAGAAAGCCACAGAAgcagaAGGTGAGGTGGCTGCTCTGAACCGCAGGATTCAGCTGATTGAGGAGGAGCTGGACCGCGCTCAGGAGAGATTGGCCACTGCGCTCCAGAAGCTCGAGGAAGCAGAGAAACAAGCAGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACCGGGCAACGAAAGACGAGGAGAAGATGGTGATGCAGGAGTTGCAGCTGAAGGAGGCCAAACAGGTTGCTGAGGACTCCGATCGCAAGTACGATGAGGTAGCTCGTAAGCTGGTCATTCTGGAAGGTGAACTGGAAAAAGCAGAGGAGAGAGCGGAGATCTCTGAGCTCAAAGGAGGTGACTTAGAGGAAGAGCTCAAGAACGTAACAAACACCCTAAAGTCTCTTGAAGCCCAGTCAGAGAAGtacGCAGACAAAGAAGATCGATATGAGGAGGAGATCAAAGTCCTCACTGACAGACTGAAAGAGACGGAAACCCGTGCTGAGTTTGCAGAGAAGACCATGGCCAAACTGGAAAAGACCATTGATGACCTCGAGGAGAGCATAGCCAACTCAAAGCAGGAGAATCTGAATCTGCACCAAGTCCTGGACCAAACCCTGCAGGAGCTTAACAGCTTGTGAGCATCACAAAGAGGAGACATACCGACAGCAATCAACATTCCACACTTCTCATCAAgcattcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt
>XM_022678906.1
TTTTCCTCTCAGGCTTCCTCATTCCCAGCTCAGGCTCAGGCAGTCTGAATGGAAAAAGTTGGAAAACTTAGTTTTTGAGAGAAAACAGATAAACGAGCTGGGAATTTCCTTataaagtgagtttttttgatagtaaattactttttgtttatttagtgtatCTCGTTCAACTCAGGCTGAGTTAGCCAGGAATTAGCCCGGTTTTAGCCCGGTAATGTCTGCGAACTCGCTGGACGCGGTGAAGAGGAAGATCCAGGCGCTGCAGCAGCAGGCGGACGATGCGGAGGACCGAGCGCAGCTGCTGCAGAGGGAGCTGGACGAGGAGCGAGACAACCGGGAGAAAgcagaAGGTGAGGTGGCTGCTCTGAACCGCAGGATTCAGCTGATTGAGGAGGAGCTGGACCGCGCTCAGGAGAGATTGGCCACTGCGCTCCAGAAGCTCGAGGAAGCAGAGAAACAAGCAGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACCGGGCAACGAAAGACGAGGAGAAGATGGTGATGCAGGAGTTGCAGCTGAAGGAGGCCAAACAGGTTGCTGAGGACTCCGATCGCAAGTACGATGAGGTAGCTCGTAAGCTGGTCATTCTGGAAGGTGAACTGGAAAAAGCAGAGGAGAGAGCGGAGATCTCTGAGCTCAAAGGAGGTGACTTAGAGGAAGAGCTCAAGAACGTAACAAACACCCTAAAGTCTCTTGAAGCCCAGTCAGAGAAGtacGCAGACAAAGAAGATCGATATGAGGAGGAGATCAAAGTCCTCACTGACAGACTGAAAGAGACGGAAACCCGTGCTGAGTTTGCAGAGAAGACCATGGCCAAACTGGAAAAGACCATTGATGACCTCGAGGATGAACTGTACGCTCAAAAGCTGAGGGTGAAGGCCATTACCGAGGAGCTGGATCTCGCCCTAAATGACATGACCTCCATGTAGATGAACCTCCCTCACTATCTCTTTTATCGCCAGGCAGCTGCCGGTGGAAGATCTAAGTGCCTTAAACCCCCCCTCATCTATTTTTTCCACTATAAAATATGCATAGCGAAGATGCAGGTGCTGCTGAAGCATTAAGAAGTGAGGCTGGCGACCCAGTTCACATCTTACTGTGCCTCTGTTCTTCTGTTCCTCATCTTTTCTTCTTCCTGATTTCTTTTTCTGTGCCTGAAATCTGCTACCTTTATGTTCCGGCTTAAatgataaagttttaataaagttattattagTAAATCTAA
>XM_022678907.1
CCACTTTTTTCCTCTCAGGCTTCCTCATTCCCAGCTCAGGCTCAGGCAGTCTGAATGGAAAAAGTTGGAAAACTTAGTTTTTGAGAGAAAACAGATAAACGAGCTGGGAATTTCCTTataaagtgagtttttttgatagtaaattactttttgtttatttagtgtatCTCGTTCAACTCAGGCTGAGTTAGCCAGGAATTAGCCCGGTTTTAGCCCGGTAATGTCTGCGAACTCGCTGGACGCGGTGAAGAGGAAGATCCAGGCGCTGCAGCAGCAGGCGGACGATGCGGAGGACCGAGCGCAGCTGCTGCAGAGGGAGCTGGACGAGGAGCGAGACAACCGGGAGAAAgcagaAGGTGAGGTGGCTGCTCTGAACCGCAGGATTCAGCTGATTGAGGAGGAGCTGGACCGCGCTCAGGAGAGATTGGCCACTGCGCTCCAGAAGCTCGAGGAAGCAGAGAAACAAGCAGATGAGAGCGAGAGagGCATGAAGGTGATTGAGAACCGGGCAACGAAAGACGAGGAGAAGATGGTGATGCAGGAGTTGCAGCTGAAGGAGGCCAAACAGGTTGCTGAGGACTCCGATCGCAAGTACGATGAGGTAGCTCGTAAGCTGGTCATTCTGGAAGGTGAACTGGAAAAAGCAGAGGAGAGAGCGGAGATCTCTGAGCTCAAAGGAGGTGACTTAGAGGAAGAGCTCAAGAACGTAACAAACACCCTAAAGTCTCTTGAAGCCCAGTCAGAGAAGtacGCAGACAAAGAAGATCGATATGAGGAGGAGATCAAAGTCCTCACTGACAGACTGAAAGAGACGGAAACCCGTGCTGAGTTTGCAGAGAAGACCATGGCCAAACTGGAAAAGACCATTGATGACCTCGAGGAGAGCATAGCCAACTCAAAGCAGGAGAATCTGAATCTGCACCAAGTCCTGGACCAAACCCTGCAGGAGCTTAACAGCTTGTGAGCATCACAAAGAGGAGACATACCGACAGCAATCAACATTCCACACTTCTCATCAAgcattcctgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgt

Function

symbol description
tpm4b Predicted to enable actin filament binding activity. Predicted to be involved in actin filament organization and muscle contraction. Predicted to be active in actin filament. Is expressed in cardiovascular system; cephalic musculature; epiphysis; and otic vesicle. Orthologous to human TPM4 (tropomyosin 4).
tpm4 Predicted to enable actin filament binding activity; protein heterodimerization activity; and protein homodimerization activity. Involved in osteoblast differentiation. Located in stress fiber.

NR:

description
tropomyosin alpha-4 chain isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022678904.1 True 1409 mRNA 0.49 9 10558114 10581973
XM_022678905.1 False 1238 mRNA 0.50 9 10558114 10583740
XM_022678906.1 False 1254 mRNA 0.48 8 10569291 10581973
XM_022678907.1 False 1089 mRNA 0.50 8 10569285 10583740

Neighbor

gene id symbol gene type direction distance location
LOC111194617 NA coding upstream 105624 10440723 ~ 10452490 (+)
LOC103024215 NA coding upstream 114402 10442990 ~ 10443712 (+)
LOC111194532 NA coding upstream 150443 10390479 ~ 10407671 (+)
LOC103040403 dad1,LOC103040403,LOC107713681,LOC107558269 coding upstream 171956 10382880 ~ 10386158 (+)
LOC103032326 NA coding upstream 417601 10133810 ~ 10140513 (+)
rab8a rab8a,LOC107687930,LOC107696202,LOC103479775 coding downstream 2019 10585759 ~ 10593172 (+)
sugp1 sugp1,LOC107729615,LOC107563402 coding downstream 24858 10608598 ~ 10621005 (+)
LOC103022822 LOC108427196,LOC108280712 coding downstream 61650 10645390 ~ 10693383 (+)
ndufa13 ndufa13,nduad,LOC102786334,LOC106569554,LOC106600555 coding downstream 113960 10697700 ~ 10701517 (+)
LOC103047654 LOC108427199 coding downstream 122499 10706239 ~ 10717818 (+)
G150883 NA non-coding upstream 39191 10512088 ~ 10518923 (+)
G150757 NA non-coding upstream 250709 10301373 ~ 10307405 (+)
G150752 NA non-coding upstream 276899 10280470 ~ 10281215 (+)
G150735 NA non-coding upstream 379637 10168326 ~ 10178477 (+)
G150733 NA non-coding upstream 438345 10119321 ~ 10119769 (+)
G150902 LOC108427200 non-coding downstream 136762 10720502 ~ 10724360 (+)
G150938 NA non-coding downstream 209808 10793548 ~ 10804059 (+)
G150953 NA non-coding downstream 356243 10939983 ~ 10942003 (+)
G150976 NA non-coding downstream 433013 11016753 ~ 11017418 (+)
G151022 NA non-coding downstream 489159 11072899 ~ 11073193 (+)
LOC111194616 NA other upstream 115871 10409793 ~ 10442243 (+)
LOC103040721 LOC108427133,LOC108280800 other upstream 194739 10320269 ~ 10363375 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other upstream 278284 10191520 ~ 10279830 (+)
LOC103031168 NA other upstream 405397 10142124 ~ 10152717 (+)
G150674 tpgs1 other upstream 705260 9851218 ~ 9852854 (+)
mau2 mau2,LOC106573592 other downstream 38919 10622659 ~ 10635541 (+)
G150935 NA other downstream 156993 10740733 ~ 10741138 (+)
LOC103037335 LOC108280688,LOC108427207 other downstream 694625 11278365 ~ 11531411 (+)
LOC111194536 NA other downstream 947829 11531569 ~ 11539837 (+)
LOC103037021 LOC103037021 other downstream 968799 11552539 ~ 11561544 (+)

Expression


Co-expression Network