LOC103022131 (LOC108280703)


Basic Information

Item Value
gene id LOC103022131
gene name LOC108280703
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 1122015 ~ 1192644 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679366.1
GCTTCAGTagtggaggaggaagatgatgaagatgatgagggTGAGGTCAGTCTGGATGCTGACACTGCTCTACAGCACTGTAGTTCTGCATGTCGAGGCAAAGGAGGCTTGTTACTGTAACGGGAAATCCAAATGTCACTGTCAAGGAGTTAAAGGCCAAAGgGGTGAAAAGGGGTATCCTGGTGATTCTGGACCTCCTGGAGTAAAAGGCTATGCTGGAGCTGAAGGTCATCGAGGGCCTCAGGGTGAAAAGGGATATCCTGGTCCTGTTGGTGTTCCTGGAGCAAAAGGGGACAggGGTCTTGATGGAAATATAGGTTTCCTTGGAGCTCCAGGTTTGCCGGGAATCCCGGGACATCAGGGTCCTGTTGGTTTGCCTGGGAGTCCTGGATGCAACGGAACAAAGGGAGAACCTGGTGGACCTGGTCTTCCTGGCCTGCCTGGCTCCATTGGATCAACGGGAGTTCCTGGTGAACGTGGGCGAAGAggtGAACCCGGACCATCAGCTCCAAGCATTAAAGGACTCCCTGGACCTCCAGGACCTGACGGTGCTCCAGGAATTTCTGGCCCACCAGGCCGAGATGGATCTCGAGGACCTGAAGGTTACAGAGGAAGTGATGGATCTCCTGGGCCTCGAGGAACAGAAGGGTTAAAGggTCGAGAGGGACGAAGATCTGGTGTTCCAGGTCCTCCTGGACCACAGgggGATCGTGGACCCCCCGGAAGCCCTGGTCCAAGAGGAACCAAACTATATGCAAGTCTCACTCAGGACTTAAAGGGTGATATTGGAGATCCAGGCGAAATGGGCTGTCCTGGAATACCTgGAAATCCCGGCTCCTCCCACCACAGAGCTGAAAAGGGGGATAAAGGTGATGAAGGTCCTGAGggAAAATTAGGGAAGGAAGGATTACCAGGAGTTGGTGGATTAACGGGTGAAAAAGGACAGTTTGGTTATCCCGGGTATCATCCTGGTTCTCTGGGGATAAAGGGGGAGAAAGGAGACAGGGGTCCGGTGGGTCCTCCTGGAGAAgatAGCGGGTATTTTCAACCTAAAGGATATCAGGGGCCACCGGGCCCTATAGGACCACCGGGTCCACCTGGTACACCAGgTGTCTCCGGGTTTCCTGGACCACAAGGCATACCAGgtgaaTATATCATCCCTGGACCTCCGGGACCAGGCGGACCACCGGGCCAGGCCGGGACCAAAGGGGACAGGGGTGACCCAGCTCCAGATGTTTTTGGACCCCCTGGTGTGGATGGACCTCCAGGACTCCAGGGGCCTCCTGGTGACCCTGGACTTCCAGGCGCAATACTGCCCCCAGAGTATATCAACCAGGGGCCGCAGGGTCTGAAGGGAATTAAGGGTATTATGGGCCCTCCTGGAGAGTTTGGTCCACCAGGTCATAAAGgtggAAAGGGAGAGCCCTGTTTTCTGTGCTGTAACGGACAGCCAGGGCCGCCAGGTCCACCTGGAATTCCAGGTCCAAACGCAGGACCCGGGCCGAAAGGAGATGCAGGGTTTACAGGATCTCCTGGTGCTCCAGGCTTTCCGGGGGCTCCAGGCCCACCTGGACAACAGGGGGCACCAGGGACTAAAGGAGTTGGAGGAATCTCTTACCACGATGGAGAGAAGGGGGATAAAGGAGCTCCAGGTGTTCCAGGTCCACCTGGGCGAGACGGTATCCCTGGTCGTCCTGGATTCCCTGGGCTTAAGGGAATACATGGGCCCAAAGGGGATTCGAGTTCAGCATTCAGCTTCAGGGGTGATCCTGGACCTCCTGGATTTCCTGGACTTCCTGGACGCCCAGGACCCAGTGGGCCTCCGGGACCTCCAGGATACGGACTGATGGGCTTTGCTGGACTGAAGGGCAGCCGTGGAGTGCAGGGCCTCAGAGGTGCCACTGGACCACCAGgtCAGAAAGGGGAGCCAGTTGGGGTTGATGGTTATCCAGGCCATAAGGGCTTTCCAGGACCTCCAGGGCCCCCTGGACTTCCAGGGAATTCTGGGCAGCCCGGCAGAGCAGGACTTCCAGGTCAACGTGGTTCAAAAGGAAACCGTGGAGTTTGTTGTTCTGATAGTTTGGGACCTCCAGGAGTTAAGGGTAACAAAGGCCTGCCTGGACCTGCTGGAGTTCCTGGATTAGGCTTGAATGGCCAATCTGGACAGATTGGAGCTCCAGGATTACCAGGGCAAAAGGGGGAGCCTGGATATGGACCACCAGGACCCGATGGGATGCCTGGGAATGTAGGTGAGCAAGGTGCTCAAGGTCCTCCAGGAGATCAGGGGTTACCTGGTTTGCCTGGAGTACCTGGACCACCTGGAGGACCAGGAGGACTTGGACCGAAAGGTAATAAGGGGATTGTGGGTTCTCCTGGACTACCTGGACCACCCACCGACTGTACAACAACAATGGGTCCACCAGGAAATCCTGGAATTACAGGTCCACCAGGTCCACCAGGACCGAGTGGACTGAAAGGAATAAGAGGGAATCCTGGAGTCCCAGGTTTTGGTCCACCTGGTCCTTCTGGACCACCTGGACCACCTGGACCACCTGGAACGCCAATGCGTGGGATTCCTGGACTTCCTGGAGAACATGGTTCCAAAGGGTCGGCTGGAATTCCTGGAATACAAGGACCCCCTGGAGATGCAGGATTACCAGGAGTATCATCTAATGGACCACCTGGAGCTCCTGGTTTACCTGGACTACCTGGTCTTAAAGGATCTCGGGGTTTGGCTGGCGTTCAAGGCCCAAGAGGTCCACCTGGAGTTTCTGGAGATGTTGGGGAAAATGGGCCACCAGGTCCTGCAGAGCTTGGCGACCTTGGACCTCCTGGAGATCCTGGACAGCCAGgCTCGCCTGGTTTCCCTGGTGAAAGAGGAGATCCTGGACCTCCAGGAATAAGAGGAACTGATGGACGAGATGGGATTCCTGGACAACCTGGACCACAGGGTCCTGTTGGAGATCGAGGAGCCGACAGCTTCGTTCCTGGAGCTCCAGGCTCAGTTGGAGTTCGAGGAGGTCCTGGACGTATAGGATTTCCTGGTCCTCGGGGTGTGAAGGGAGAACCTGGTTTGTCTGGACTCCCCGGGCCTTCAGGAGCTCCTGGTATACCAGGAATTAAAGGCCATAAAGGAGATCTAGGCAGAGGGTCTCTGGGAGCTTCTGGGCCAAGAGGGCAAAAGGGAGAACCTGGACTTCCAGGTCATGGTGCACAGAAAGGAGAGAAGGGAAATGTTGGATATCCTGGACCCCCTGGTAGCTATGGTCCACCAGGGCCTACAGGAGACATCGGAGCTCCTGGACTTCAAGgACCACCAGGCCTACCTGGTTCAACAGGCTCTGTAGGTCCTCCTGGACCTTCTGGACACCCAGGGTTACAGGGCCCACCAGGGTCTCCTGGTCCTCCTGGACCTCGTGGACCTGTAGGTGAAAAGGGAAACCAAGGCTTGGATGGGTTTCCTGGACTTCCAGGACTGAAAGGAGACACAGgatttgtaGAGGGAGTTCCAGgcagaaaaggagagagagggaatccAGGTCCTAAAGGAGACGTAGGGCTTCCTGGCATCCCAAGCTTTGGGTACTTTGGTCCTCCTGGAAGTAAAGGAATCCCCGGGCCTTCAGGACCTCCTGGTGCACGTGGATATCCTGGTGCTTCTGGTGAATGTTTAAATGGGAGGAAAGGAGATCCTGGACTTCCAGGAAGGCCCGGAGATCAAGGGCCACAAGGCTCCAGGGGCCCTCCAGGGCCTTCCCTACCTGGATATAAAGGAGACAAGGGAGACAGGGGGCTGCCAGGTCATCCAGGTCGTGTTGGTGAGAGAGGAGGCCATGGACCCCAGGGGCTTCagGGACCTGGAGGTGGAGTGGGCAGTCCTGGAGTACGAGGGGATCCCGGACCTCCTGGACCCCCAGGGTTACAGGGTGAGAACGGAGACCCGAACTACTATCCTGGACGTAAAGGTGTTCCTGGACCAAGAGGACCCCCTGGACCACCAGGTCTAACAGGACAAAGTGTTTCAGAGCAGTATGACGTAATACCTGGACACCCTGGACCAGATGGAAGCCCTGGAGCCCCCGGCTTACCTGGATATACTGGACCACCTGGACCACCGGGGCCTGCAGGTGCTCAAGGCTCCAGAGGTGTTCCAGGTCAGTCTGTTCCAGGACTTCCTGGCTTTCCTGGGCAGAAAGGAGATAAAGGAGTACCTGGGCAGCCAGGTCCAGTTGGTTATATTGGTCAGCCAGGACTGAAAGGTCTTCGTGGTCCTCCAGGAAGAGCAGTTCAGGGTCTTCTCGACAGCTTTCTGCTGACCAGACACAGCCAGAGCATCCAAGTGCCCACCTGCCCCCAGGGCACCTCCCTCATCTACTCCGGATACTCCTTACTCTATATCAACGGGAATGAGAGGGCACATGGGCAAGACCTGGGTTCGATGGGCAGCTGCTTGCCTCGCTTCTCCACCATGCCCTTCCTGTTCTGTGATACGGAGAGCACCTGCCGCTACGCCTCCCGCAACGACTACTCCTATTGGCTCAGCACGGACCAGGCCACGCCCCCCAACATGCACCTGATCCGGGGGGAAGACCTGGCCAAGTACATCAGCAGGTGTTCAGTATGTGAGAGCACCGCCAACACCATCGCCATCCACAGCCAGACCACCCAGACCCCCCAGTGCCCCCGCGGCTGGTTCTCACTCTGGACCGGATATTCCTTCGCCATGCAAACCGGTGCGGGAGCGGGGGGGTCCGGGCAGCCCCTGATCTCTCCCAGTTCCTGTCTGGAACACTTTCGGCAGGTTCCCTTCATCGAGTGTCACGGCCGAGGTACCTGTAACTATTACCCAGACTCCTACAGCTACTGGCTCGCCTCCCTCGACCCTGCTCACATATTCAGTAAGCCTGTACCTCAAACAGTGAAAGGTCCGGATATGACGAGCGTCGTGAGTCGCTGCAGAGTCTGCatgaaaacactgtaaaaccagCCCAAAAGCTGCTGAAATAtcaatatgaattattattatatacattaataataattaagctGCATTTCTATAGACGTCActagatggatttttttttgcatttacatAAATGATCATATGATAAGAAAATGCCTGGtgaatagagatagagatatggGTTTATAGCAGAAGTGACTGTACAGCATCATcaacatttacttacttacagtaTAAAGTAGGTGGACTGCAGTGTTATTGTTAAATTTCCAAATTAACCAGAATCCAGAAGCCAGTCTTGTATCTCTGTGTGCATCATGCTTTTTTGAGGTCTCTttgctgtatatctgtatattgtCTGATGATATGaagtgaattaattaatttgattgtCTACATTATAATTGTCATGTGATTAAATACAGATTGGTACAGAga

Function

NR:

description
PREDICTED: collagen alpha-5(IV) chain-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679366.1 True 5401 mRNA 0.55 52 1122015 1192644

Neighbor

gene id symbol gene type direction distance location
LOC103028630 NA coding upstream 68080 991084 ~ 1053935 (+)
trnav-aac_10 NA coding upstream 139249 982694 ~ 982766 (+)
lhx8 lhx8,lhx8a,LOC108436043,LOC107693563 coding upstream 425320 680199 ~ 696695 (+)
tyw3 NA coding upstream 505662 611239 ~ 616353 (+)
acot11 acot11 coding upstream 552576 541500 ~ 569439 (+)
LOC103027172 NA coding downstream 209379 1402023 ~ 1413005 (+)
LOC107197232 LOC108436029 coding downstream 254811 1447455 ~ 1460722 (+)
LOC103026285 saga,LOC108440874,LOC108280708 coding downstream 272013 1464657 ~ 1481526 (+)
proc LOC108440860,LOC108440861 coding downstream 330957 1523601 ~ 1535483 (+)
LOC103025667 wdr33,LOC107695163 coding downstream 360151 1552795 ~ 1592500 (+)
G148407 NA non-coding upstream 140919 977029 ~ 981096 (+)
G148397 NA non-coding upstream 153889 966069 ~ 968126 (+)
G148399 impad1 non-coding upstream 166164 952436 ~ 955851 (+)
G148381 NA non-coding upstream 378224 741559 ~ 743791 (+)
G148348 ssbp3 non-coding upstream 582791 492284 ~ 539224 (+)
G148438 NA non-coding downstream 676 1193320 ~ 1277042 (+)
G148441 NA non-coding downstream 7266 1199910 ~ 1204754 (+)
G148445 cwc25,LOC107562839,LOC107572154,LOC106587943 non-coding downstream 22824 1215468 ~ 1218436 (+)
G148455 NA non-coding downstream 66441 1259085 ~ 1261071 (+)
G148466 NA non-coding downstream 145631 1338275 ~ 1339030 (+)
LOC103021490 LOC103021490 other downstream 1891 1194535 ~ 1197577 (+)
G148442 NA other downstream 7641 1200285 ~ 1205400 (+)
LOC103032064 LOC108440872,LOC107705307,LOC107653521,LOC107660320 other downstream 810955 2003599 ~ 2193725 (+)
G148599 NA other downstream 920029 2112673 ~ 2114465 (+)
tnk2 tnk2 other downstream 1100988 2293632 ~ 2403354 (+)

Expression


Co-expression Network