LOC111194608


Basic Information

Item Value
gene id LOC111194608
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5140382 ~ 5143020 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679369.1
AACAAACTTCAGTCTTCAGTCAAGCTGCTTCACTCAGAAACAGGAAGTGTATTAGTGTTTAGAGACTCAGAACAGAATCATGCACTTTTACTCTCTCATCAGTTCTTTaattctctctgtgtttctgctcTTCATCTCAGGTTCTGAGAGCGTGAAGACACTGAAACGTTTAACTGTAAGAAGAGGAGGATCTCTCACTGTTCCTTGTTTATATGAAGAGGAATATAAATCACACCGTAAATACTGGTGTAAGGGGGGAACCTGGTCCTCATGTACAATAGTAGCCAAAACCAACACAAGAAATACAGGAATATCAATCACTGATCATCCATCCCAGAATATGTTTACTGTGGATCTGAAGAAACTCCAAGACTCTGACTCTGGATGGTACTGGTGTGCTTTGGAAATCGATGGTCCAGATGACGGGGATTCTGTGTATCTGACGGTCAGTTCAGATCCTGCTGTGTGGGTGGAGAACAGTAGAGTGATTGGTCAGGAAGGGGGCGGAGTCAGTGTCCAGggtaactacagctctggatatAAGAATGAAGAGAAGAAGTGGTGCAGATTTAAAGACTGGAGCTGCTACACCTTCCAGGATTCAACAGTGAAGATCAGTGATGATGAGAACAGAGGATCCTTCAGAGTGGAGATGATTGGTCTGCAGGAGAGTGATGCTGGCTGGTACTGGATCAGTGCAGGAGGTGTGGCGGTTACTGTTCACCTCACTGTCACTGAAAGACCTACAATgtga

Function

GO: NA

KEGG:

id description
K20395 CD300B_D_F; CO300B/D/F antigen

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679369.1 True 754 mRNA 0.45 4 5140382 5143020

Neighbor

gene id symbol gene type direction distance location
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207 coding upstream 88627 4974279 ~ 5051755 (+)
LOC103027894 LOC108410862,LOC108280684 coding upstream 263994 4849153 ~ 4876388 (+)
trnal-uaa_58 NA coding upstream 292646 4847655 ~ 4847736 (+)
trnal-uaa_57 NA coding upstream 292836 4847465 ~ 4847546 (+)
trnal-uaa_56 NA coding upstream 293026 4847275 ~ 4847356 (+)
LOC111194609 NA coding downstream 9545 5152565 ~ 5165963 (+)
LOC111194490 LOC108424092,LOC108280904 coding downstream 28246 5171266 ~ 5172421 (+)
LOC111194491 LOC108424027 coding downstream 43818 5186838 ~ 5188742 (+)
LOC103032323 LOC108424026 coding downstream 49805 5192825 ~ 5194089 (+)
LOC111194610 NA coding downstream 58620 5201640 ~ 5204000 (+)
G149574 NA non-coding upstream 102588 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 206148 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 207545 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 230551 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 300041 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 80629 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 201824 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 229989 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 282872 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 643905 5786925 ~ 5816467 (+)
LOC111194607 NA other upstream 25666 5111324 ~ 5114716 (+)
G149595 NA other upstream 38024 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 375537 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 580367 4559933 ~ 4560015 (+)
trnal-uaa_34 NA other upstream 581034 4559266 ~ 4559348 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other downstream 53121 5196141 ~ 5199985 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 84898 5227918 ~ 5258861 (+)
G149754 NA other downstream 582249 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1440026 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1792321 6935341 ~ 6947936 (+)

Expression


Co-expression Network