LOC111194609


Basic Information

Item Value
gene id LOC111194609
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 5152565 ~ 5165963 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XM_022679370.1
CAGTCGTCAGTCAAGCTGCTTCACTCAGAAACAGGAAGAGTTTTAGTGTTCAGAGACTCAGAACAGAATCATGCACTTTTACTCTCTCATCAGTTCTTTaattctctctgtgtttctgctcTTCATCTCAGgTTCTGAGAGCGTGAAGACACTGAAACATTTAACTGTAAGAAGAGGAGGATCTCTCACTGTTCCTTGTTTATATGAGAAGAAATATAAATCACACCGTAAATACTGGTGTAAGGGGGAACACTGGTCCTTATGTACAATAGTAGCCTACGCCAACACAAGTAGTACAGGAATATCAGTCACTGATCATCCATCCCAGAATATGTTTACTGTGGATCTGAAGAAACTCCAAGACTCTGACTCTGCATGGTACTGGTGTGCTGTGGAAATCGATGGGGCTGCAGATGTCAGGGATTATGTGTATCTGACGGTCAGTTCAGTTTCCACCACTCATTCTCTGCTCCTTCATTCAGATCCTGCTGTGTGGGTGGAGAACAGCACCGTGATTGGCCAGGAAGGGGACAGTGTCAGTGTCCAGggtaactacagctctggatatAAGAATGAAGAGAAGAAGTGGTGCAGAGTTAAAACCTGGAGCTGCTACCCATTCCAGGATTCAACAGTGAAGATCAGTGATGATGAGAACAGAAGATCCTTCAGAGTGGAGATGTTTGGTCTGCAGAAGAGTGATTCTGGCTGGTACTGGTTCAGTGCAGGACTTGTGGGAGTTACTGTTCACCTCACCGTCACTGAAAGACCTACAAcaacaacagcagctGTGACTACACTTCCTACCACTCAGAAAACCACCCCCCATCAGAGCACGCCAAGTTCTAAAAATGCGACTGTAAATACTGAAACAGACAATGTTGGAAATGTCTGGGTTCTGGTGGCTGTAGGTCTGGTTCTTCTGCTGATTCTGTTCAGCCTTCTCACCTATATGTTGAGAAGATCCCTCAAGAGTAATCAGAGCGAGGCCAAAGAGAGAGGCAGTGACCCTGCAGTTCACATGACGTCTACAACTGAAAACACACTGATCTACAGCGATGTGATTCATGACAACAAGAAGCCTTCATCATCTGCAGCAGCTTCTGAAAATGAAGTGACCTACAGCTCTGTACGAAGATCTCGCAAAAAGAAAACTTCTTCAGCTGCAGTGGATCGTGGAAGCGATGTGACCTACAGCTCTGTGAGGAAAGCTCCCAAAAGTAAAACTTTCTCTCCAGCAGTGGGAGATGATGGGGTGATCTACAGCTCTGTGATTCACGAGCAGGAGGTGTATGCAAATGCAATTCTGCAGACCAACTGATCAGATCGAAGAAAAAGATATGTGTCACGGtctcgctctgttcccctgtgtttctcctgtaattttccctcacgtgtgtctaatttgtagctccgccccttccccag

Function

GO:

id name namespace
GO:0048583 regulation of response to stimulus biological_process
GO:0002682 regulation of immune system process biological_process

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XM_022679370.1 True 1428 mRNA 0.46 12 5152565 5165963

Neighbor

gene id symbol gene type direction distance location
LOC111194608 NA coding upstream 9545 5140382 ~ 5143020 (+)
lrrc24 lrrc24,LOC107713676,LOC107655866,LOC107600207 coding upstream 100810 4974279 ~ 5051755 (+)
LOC103027894 LOC108410862,LOC108280684 coding upstream 276177 4849153 ~ 4876388 (+)
trnal-uaa_58 NA coding upstream 304829 4847655 ~ 4847736 (+)
trnal-uaa_57 NA coding upstream 305019 4847465 ~ 4847546 (+)
LOC111194490 LOC108424092,LOC108280904 coding downstream 5303 5171266 ~ 5172421 (+)
LOC111194491 LOC108424027 coding downstream 20875 5186838 ~ 5188742 (+)
LOC103032323 LOC108424026 coding downstream 26862 5192825 ~ 5194089 (+)
LOC111194610 NA coding downstream 35677 5201640 ~ 5204000 (+)
LOC111194492 NA coding downstream 38330 5204293 ~ 5207059 (+)
G149574 NA non-coding upstream 114771 4962090 ~ 5037794 (+)
G149572 NA non-coding upstream 218331 4932964 ~ 4934234 (+)
G149571 NA non-coding upstream 219728 4930813 ~ 4932837 (+)
G149366 LOC108410861 non-coding upstream 242734 4907417 ~ 4909831 (+)
G149357 NA non-coding upstream 312224 4840115 ~ 4840341 (+)
G149617 sbds,LOC102193797,LOC102210364 non-coding downstream 57686 5223649 ~ 5226340 (+)
G149635 NA non-coding downstream 178881 5344844 ~ 5345434 (+)
G149644 NA non-coding downstream 207046 5373009 ~ 5375260 (+)
G149652 NA non-coding downstream 259929 5425892 ~ 5508053 (+)
G149757 NA non-coding downstream 620962 5786925 ~ 5816467 (+)
LOC111194607 NA other upstream 37849 5111324 ~ 5114716 (+)
G149595 NA other upstream 50207 5090982 ~ 5102358 (+)
LOC111194485 adcyap1r1a,LOC108433074,LOC107600211,LOC107663529,LOC108280208,LOC107713631,LOC107655870 other upstream 387720 4684608 ~ 4764845 (+)
trnal-uaa_35 NA other upstream 592550 4559933 ~ 4560015 (+)
trnal-uaa_34 NA other upstream 593217 4559266 ~ 4559348 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other downstream 30178 5196141 ~ 5199985 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other downstream 61955 5227918 ~ 5258861 (+)
G149754 NA other downstream 559306 5725269 ~ 5727420 (+)
c17h3orf80 NA other downstream 1417083 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 1769378 6935341 ~ 6947936 (+)

Expression


Co-expression Network