LOC111194509


Basic Information

Item Value
gene id LOC111194509
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 7866110 ~ 7873133 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651110.1
GTCATCACCTACATGGGCGGTGTCTCCCTATACTGATTGGTTTTGGTTATACTGATTGGTGATAATGATTGGTTTTACTAAATCTGACTTACTTCATGTTATGTGTATCAAGCAGCAGAGTGAGTGTCAccacaattattattttctatttccttctatttttaaattggagataatctacagttacagtagatacagtagtcATGAGCAAAAATGTTTGTACTAGTACTgctgacaagacaagacaagacaagacaagacaagacaagacctaaaccgagaccacctcttttggtatTACCAAATTTTTGTCAGGACCAAacatggtgtgtgtgagagcactCTTagtatatttgtagtttaatcaaGTTTTGAAAAATTTCTAGAATGGTCAAGTACTTATACCTGCTTCTGTTTCCTTTTCAGATGGGGCTTTGTTGCCTCCTGGATTTGGGCTGAATTCAGTCTTGGATGTGTCCAAGTTCTTTGCTTTTGGAGGACTCTACTTGAGCTTCACTTACTAATGAAATGCAGCAGCTTCACTGTAAAAGACTAAAATGGACGTCCTAAGAGTTGTTTCCACATGGTGTCCAACTCCCCCACCCACCAGTGGTCTGTTCGATTATGCCTGTCTGAAGTTTGGCAGACACCTGTGTTTGGACATGGCCTCAAAAAGGTGTCAAGAGTTgggtggaaaagaaaaaaaaagaaaagaccaGTGAGATTCTAATGTGTCGCTTGCAGGATTGTTTCTTTACCTCGTTGGTAAGTCTCTGTTGAGCTTTTGGGGTCGTTTACACTGgctgcccaaaaggacacttgcaGATGCCAAAAGAACACctgaagatgcccaaaaagacacttggtgATCTCCAAAAAGAccatggagatgcccaaaggtacacttggagatgcccaaaaggccctgtagatgcccaaaaagacattttgaaatgcccaaaaggacacttagtGATCTCAAAAATGACcgtggagatgcccaaaaggacgcttggagatgcc

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651110.1 True 1023 lncRNA 0.41 3 7866110 7873133

Neighbor

gene id symbol gene type direction distance location
LOC103046888 LOC103046888,LOC108424009 coding upstream 28685 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 238570 7620597 ~ 7627540 (+)
srprb srprb coding upstream 254499 7606489 ~ 7611611 (+)
LOC103022780 myl10,LOC103022780,LOC108424014,LOC108413922,LOC107734439,LOC107577538,LOC107728843 coding upstream 325974 7517004 ~ 7540136 (+)
LOC111194504 NA coding upstream 919142 6944489 ~ 6946968 (+)
ap1m1 ap1m1,LOC107696211 coding downstream 118361 7991494 ~ 8017086 (+)
LOC103039989 LOC108427187,LOC108429492 coding downstream 302976 8176109 ~ 8179619 (+)
LOC111194453 NA coding downstream 425111 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 456165 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 496236 8369369 ~ 8373186 (+)
G150104 NA non-coding upstream 58939 7806866 ~ 7807171 (+)
G150069 NA non-coding upstream 126022 7679668 ~ 7740088 (+)
G150065 LOC108424050 non-coding upstream 206432 7654428 ~ 7659678 (+)
G150060 NA non-coding upstream 218224 7647623 ~ 7647886 (+)
G150015 cux1 non-coding upstream 482132 7374013 ~ 7383978 (+)
G150132 NA non-coding downstream 3062 7876195 ~ 7877950 (+)
G150203 NA non-coding downstream 95644 7968777 ~ 7969064 (+)
G150196 NA non-coding downstream 107961 7981094 ~ 7981400 (+)
G150235 NA non-coding downstream 255333 8128466 ~ 8128760 (+)
G150239 NA non-coding downstream 282503 8155636 ~ 8155845 (+)
G150099 NA other upstream 60856 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 614744 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 918174 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1279741 6583046 ~ 6586369 (+)
G149754 NA other upstream 2138690 5725269 ~ 5727420 (+)
G150131 NA other downstream 1507 7874640 ~ 7879301 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 775697 8648830 ~ 8656708 (+)
G150579 NA other downstream 1682526 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1978085 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 2268991 10142124 ~ 10152717 (+)

Expression


Co-expression Network