LOC111194510


Basic Information

Item Value
gene id LOC111194510
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 8271313 ~ 8275506 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>XR_002651111.1
GAGAAGGACAGTCACCCAGAATCATCGCTGATGTCTAATAATCGAAGGTTACACAGAGCCATAAGCCATTAAAGGCAGTATGCAGTGAGAGGGAACCTCAAGCTGGACTTTTCTGCAGGAAGAAATGCCCCCCCtgccccctctccctctcctgtCTCCCCTGGGGAGGGCTGATGGAGTGGAGGCTCATCTCCCTAACGGCCTGGCGCTGCGCCATCAACCAGCCAGCACCAGCAAAGCGGCGGGAGGCAAGGACAGGTCACTACACACTCACCCCGCTCAGGGCCACTATACACTGGGGTACTAATGATGTGCTGAGGGGGCAGGGGCTTCAGATAGTCAGCATTAATAGACAAAGCCTTTAAACAATTAGGCTGTTtgtgtgttgatttttttttgttctatacattatatacattatttgtTCAAAAACATATTTGACGTTTGTCCATCATAGACTATTAATATGTATAGGTTGTGTGTatttgctgtccaatgaaaacatgTATCTACTTTTTTAgatttcttcatagtttgaagcCTGTAGGTGGACTGTACACTGTGTTAACAATCCTGAAAGGacagaccaataaaaatgctctaaatttatTGTGAAGAACATTATTAGCTTCTTCTGTAAATTCAcaattttggagatacatttttttttattggacagggACACAAAAAGCTTATATCTCCAAAACTTTcagtaaaaagattttattccaagtaaaTGTGGCGCATCTCTATTGATCTCTACATCAGGTAATTTTGGTACAAAAGAACAAACAATGTTCAATGGTGCCaatggtggaaaaaaaataacaatttgaaaaaaaactttttttttatgttttgagtgtttttttgtttatttatttatttttatttattatttttatttttaagatataTAGTTAATCgttaaataatattttggtTTAGATGTAAATGTGCTtaatgttatatacagtcataaaCTTGAACAAACTATCTTTATTGCGATTGTTAGTGCAAAATATTCACAACATTTATCTGAAAATATGTCTAAACAAgacaaaatatgacaaaatgacCCATGTAGTTATAGTTAACAAAAAACAGCAACcaaaaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
XR_002651111.1 True 1119 lncRNA 0.36 2 8271313 8275506

Neighbor

gene id symbol gene type direction distance location
LOC103039989 LOC108427187,LOC108429492 coding upstream 91694 8176109 ~ 8179619 (+)
ap1m1 ap1m1,LOC107696211 coding upstream 254227 7991494 ~ 8017086 (+)
LOC103046888 LOC103046888,LOC108424009 coding upstream 433888 7821981 ~ 7837425 (+)
neu4 neu4 coding upstream 643773 7620597 ~ 7627540 (+)
srprb srprb coding upstream 659702 7606489 ~ 7611611 (+)
LOC111194453 NA coding downstream 22738 8298244 ~ 8299583 (+)
LOC111194511 LOC108427182,LOC108280696,LOC107750922,LOC105906996 coding downstream 53792 8329298 ~ 8357694 (+)
LOC103029326 LOC103029326,LOC108427183,LOC107750947,LOC107696854,LOC107552712,LOC108280697,LOC107723974,LOC107596250,LOC107687917 coding downstream 93863 8369369 ~ 8373186 (+)
LOC103032299 NA coding downstream 110796 8386302 ~ 8394623 (+)
pgpep1 pgpep1,LOC107696873,LOC107552686,LOC107596298,LOC107660389,LOC107740549 coding downstream 208040 8483546 ~ 8493022 (+)
G150254 NA non-coding upstream 10313 8207468 ~ 8261000 (+)
G150245 NA non-coding upstream 80572 8188267 ~ 8190741 (+)
G150239 NA non-coding upstream 115468 8155636 ~ 8155845 (+)
G150235 NA non-coding upstream 142553 8128466 ~ 8128760 (+)
G150196 NA non-coding upstream 289913 7981094 ~ 7981400 (+)
G150260 rx2,LOC108427186,LOC108280798,LOC107687913,LOC107723957,LOC107596245 non-coding downstream 799 8276305 ~ 8279882 (+)
G150269 cplx4c,LOC108427184 non-coding downstream 37521 8313027 ~ 8324648 (+)
G150297 NA non-coding downstream 161089 8436595 ~ 8437402 (+)
G150292 NA non-coding downstream 306938 8582444 ~ 8585056 (+)
G150305 NA non-coding downstream 316635 8592141 ~ 8592375 (+)
G150131 NA other upstream 392012 7874640 ~ 7879301 (+)
G150099 NA other upstream 466059 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1019947 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 1323377 6935341 ~ 6947936 (+)
c17h3orf80 NA other upstream 1684944 6583046 ~ 6586369 (+)
G150321 timm44,LOC108427097,LOC105903914 other downstream 373324 8648830 ~ 8656708 (+)
G150579 NA other downstream 1280153 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 1575712 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 1866618 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1916014 10191520 ~ 10279830 (+)

Expression


Co-expression Network