LOC111194515



Basic Information


Item Value
gene id LOC111194515
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information


Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 9122028 ~ 9164242 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence


>XR_002651115.1
CCCTCCTGCTCTCCGTTTCATTCTCTCGCGCGCTCGCCCACTCTAcccatctttctctctatatatatctgtatctctcttcttttctttttatctttctctcactgCTGCGGTTTCAGAAACGGAcgttaaaaacagcagaaaggAAAGAAGTTTTAACCAAGAGCTTGAGCCAGACGGTCGGTGGTCGTGTGAAGATGCGGACCCTCAGATTCCCTGTGCTCGTGCTGGAGGACGGCAAGACGATCGTGGCTAACTGGAGTATGATCAGCATCACCTGCTTCACCAGGCCAGAAGTGCAGCACTACCAGCGCTCGAGAATCAACCACATAAAAGAAAGccgaagaggagagagaagcgagaagaagagaagagcgAGGGGGAGGGAGGGGAGATGAAGGATGGATAGAGATAGATGGATGAACTCTGAGCAGTCCGGCTCAGATTGTGATCGCCGGGGGCTCTCCTGCTATCTTCCTCCTCTgcagcccctctctctctccagcccgGCGAGCGTGCAGGCCCGCTAAGGCCAGCCTGGGTGAGCCGTCCTGGGCCTGAGAGGCAGCCTGAACTACCCTCCCTCGGTCAGCAGCACCTCCGGAGCCCACAGACAAATCAATAccagcacacagagactgatGCTGGATCACCCAAGCTAGCCCCCCAGCCGCGAGCCAAATGAcctcacacacacgcaaacacacacatacacacggtCAAAGATGctagcatatatatatagttatgtactttctctctc
>XR_002651116.1
tttcccAAAGCCTGGAGACAACTCACAGCTCCTCTCTCACCCTCTAAACGGAcgttaaaaacagcagaaaggAAAGAAGTTTTAACCAAGAGCTTGAGCCAGACGGTCGGTGGTCGTGTGAAGATGCGGACCCTCAGATTCCCTGTGCTCGTGCTGGAGGACGGCAAGACGATCGTGGCTAACTGGAGTATGATCAGCATCACCTGCTTCACCAGGCCAGAAGTGCAGCACTACCAGCGCTCGAGAATCAACCACATAAAAGAAAGccgaagaggagagagaagcgagaagaagagaagagcgAGGGGGAGGGAGGGGAGATGAAGGATGGATAGAGATAGATGGATGAACTCTGAGCAGTCCGGCTCAGATTGTGATCGCCGGGGGCTCTCCTGCTATCTTCCTCCTCTgcagcccctctctctctccagcccgGCGAGCGTGCAGGCCCGCTAAGGCCAGCCTGGGTGAGCCGTCCTGGGCCTGAGAGGCAGCCTGAACTACCCTCCCTCGGTCAGCAGCACCTCCGGAGCCCACAGACAAATCAATAccagcacacagagactgatGCTGGATCACCCAAGCTAGCCCCCCAGCCGCGAGCCAAATGAcctcacacacacgcaaacacacacatacacacggtCAAAGATGctagcatatatatatagttatgtactttctctctc

Function


GO:

id name namespace
GO:0030182 neuron differentiation biological_process
GO:0007399 nervous system development biological_process
GO:0022008 neurogenesis biological_process
GO:0048699 generation of neurons biological_process
GO:0003676 nucleic acid binding molecular_function
GO:0003677 DNA binding molecular_function

KEGG: NA

RNA


RNA id representative length rna type GC content exon number start site end site
XR_002651115.1 True 763 lncRNA 0.54 3 9128891 9164242
XR_002651116.1 False 689 lncRNA 0.55 4 9122028 9164242

Neighbor


gene id symbol gene type direction distance location
LOC103025531 LOC108427106 coding upstream 243224 8865571 ~ 8878804 (+)
polr2e polr2e,polr2eb,LOC107669821 coding upstream 338830 8777660 ~ 8783198 (+)
LOC111194513 LOC108427173,LOC105903927,LOC108280567,LOC105900968,LOC107660390,LOC100697758,LOC100692846 coding upstream 441168 8667922 ~ 8680860 (+)
LOC103031660 homer3,LOC108427175,LOC108280570,LOC107660377,LOC107696283 coding upstream 541159 8522150 ~ 8580869 (+)
upf1 upf1,LOC107724030,LOC107696277 coding upstream 602696 8495095 ~ 8519332 (+)
eef2 LOC101482186,LOC102796634,LOC107096963,LOC101162630,LOC100708490 coding downstream 70439 9234681 ~ 9254117 (+)
LOC103031140 LOC108427160,LOC107724981,LOC108280289,LOC106923029,LOC107096951 coding downstream 114223 9278465 ~ 9359957 (+)
LOC103028184 LOC108427103 coding downstream 361091 9525333 ~ 9584009 (+)
LOC111194519 NA coding downstream 645084 9809326 ~ 9819170 (+)
plekhj1 plekhj1,LOC107671816,LOC107696566,LOC107750216 coding downstream 665861 9830103 ~ 9837255 (+)
LOC103029650 NA non-coding upstream 8372 9104877 ~ 9113656 (+)
G150529 NA non-coding upstream 16294 9105317 ~ 9105734 (+)
G150469 NA non-coding upstream 235999 8885788 ~ 8886029 (+)
G150318 timm44,LOC108427097,LOC105903914,LOC101155883 non-coding upstream 474837 8642368 ~ 8647191 (+)
G150317 NA non-coding upstream 481854 8639891 ~ 8640174 (+)
LOC111194516 NA non-coding downstream 594 9164836 ~ 9185937 (+)
G150539 NA non-coding downstream 31090 9195332 ~ 9197449 (+)
G150540 NA non-coding downstream 33323 9197565 ~ 9199519 (+)
G150544 armc6 non-coding downstream 65695 9229937 ~ 9232543 (+)
G150545 NA non-coding downstream 68659 9232901 ~ 9233367 (+)
G150321 timm44,LOC108427097,LOC105903914 other upstream 465320 8648830 ~ 8656708 (+)
G150131 NA other upstream 1242727 7874640 ~ 7879301 (+)
G150099 NA other upstream 1316774 7769684 ~ 7805254 (+)
LOC111194506 NA other upstream 1870662 7249165 ~ 7251366 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other upstream 2174092 6935341 ~ 6947936 (+)
G150579 NA other downstream 391417 9555659 ~ 9567097 (+)
G150674 tpgs1 other downstream 686976 9851218 ~ 9852854 (+)
LOC103031168 NA other downstream 977882 10142124 ~ 10152717 (+)
LOC103021810 kcnj10,LOC107684569,LOC107730827,LOC107683767,LOC107750225,LOC108280182,LOC107576513 other downstream 1027278 10191520 ~ 10279830 (+)
LOC103040721 LOC108427133,LOC108280800 other downstream 1156027 10320269 ~ 10363375 (+)

Expression



Co-expression Network