trnal-uaa_22


Basic Information

Item Value
gene id trnal-uaa_22
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 4535090 ~ 4535172 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnal-uaa_22
ACCAGgatggccgagtggttaaggcgttGGACTTAAGATCCAATGGGCAAATGCCCGCGTGGGTTCGAACCCCACTCCTGGTA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnal-uaa_22 True 83 tRNA 0.57 1 4535090 4535172

Neighbor

gene id symbol gene type direction distance location
LOC111194480 LOC108433077,LOC108280739 coding upstream 57602 4436868 ~ 4477488 (+)
LOC111194482 NA coding upstream 148502 4384859 ~ 4386588 (+)
LOC111194481 LOC108433078 coding upstream 248891 4270017 ~ 4286199 (+)
LOC103021386 NA coding upstream 411680 4121315 ~ 4123410 (+)
LOC103047776 NA coding upstream 537031 3953403 ~ 3998059 (+)
LOC103045023 LOC108433075,LOC108280757 coding downstream 49141 4584313 ~ 4621712 (+)
trnal-uaa_36 NA coding downstream 307297 4842469 ~ 4842550 (+)
trnal-uaa_37 NA coding downstream 307487 4842659 ~ 4842741 (+)
trnal-uaa_38 NA coding downstream 307678 4842850 ~ 4842932 (+)
trnal-uaa_39 NA coding downstream 307868 4843040 ~ 4843122 (+)
G149278 NA non-coding upstream 193623 4284928 ~ 4341467 (+)
G149260 NA non-coding upstream 308695 4171084 ~ 4226395 (+)
G149251 mcm6l,LOC107757789,LOC108280894,LOC108433082,LOC107600254 non-coding upstream 419544 4114171 ~ 4115546 (+)
G149247 NA non-coding upstream 432221 4100946 ~ 4102869 (+)
G149239 NA non-coding upstream 501897 4031287 ~ 4033193 (+)
G149335 NA non-coding downstream 88658 4623830 ~ 4627706 (+)
G149340 NA non-coding downstream 183904 4719076 ~ 4771503 (+)
G149357 NA non-coding downstream 304943 4840115 ~ 4840341 (+)
G149366 LOC108410861 non-coding downstream 372245 4907417 ~ 4909831 (+)
G149571 NA non-coding downstream 395641 4930813 ~ 4932837 (+)
trnal-uaa_21 NA other upstream 125 4534883 ~ 4534965 (+)
trnal-uaa_20 NA other upstream 355 4534653 ~ 4534735 (+)
trnal-uaa_19 NA other upstream 800 4534208 ~ 4534290 (+)
trnal-uaa_18 NA other upstream 1102 4533906 ~ 4533988 (+)
trnal-uaa_17 NA other upstream 2293 4532715 ~ 4532797 (+)
trnal-uaa_23 NA other downstream 219 4535391 ~ 4535473 (+)
trnal-uaa_24 NA other downstream 833 4536005 ~ 4536087 (+)
trnal-uaa_25 NA other downstream 1063 4536235 ~ 4536317 (+)
trnal-uaa_26 NA other downstream 19491 4554663 ~ 4554745 (+)
trnal-uaa_27 NA other downstream 20893 4556065 ~ 4556147 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
eurasian perch (Perca fluviatilis) trnal-uaa_3 NA non-coding NC_053122.1 CM020919.1 36227824 ~ 36227906 (+)
tiger barb (Puntius tetrazona) trnas-aga_58 NA coding NC_056702.1 CM032071.1 26108316 ~ 26108397 (+)