CI01000012_08908244_08917212 (VSTM4A)


Basic Information

Item Value
gene id CI01000012_08908244_08917212
gene name VSTM4A
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8907936 ~ 8917596 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08908244_08917212.mRNA
AGTGAGACAGGCCACTGTCTTCACTCATTATCTAAGCTGAGTTCGTAAACCCCACTAAAACCTGGCCGCCGCTCCTACTTTCGTGTGCTGTAGGTCCAGCTGAAAATTTGTGCTGCTTCCAAAGGTTCTCTCAGGAAATGACATTTCCTACGTACTTTTCACTGGCAGGGGGAGTGATTTCAGGATCGAGAAAGAAAATGAGTGCGGGTGAAAAAAGAAAGACTGGGAAAGAGGGGTGTTTCTAACTGGGAACAGAGCACGCACTGTTTCAGATTACACACACACAGTGAGAGGGAGAAAGAGAAAGAAAAGGAGAAAAAATCCCAGGGACTCCTTTCTTTTCTTGACGTTTAGTTGAGTTTATGGAGCCTACGGGTCTGCAAAATGAAGCTCTCCGCTGTTGCGATAGTTCTCCTGACTAGGGCTTTTATTGGAGTGTCTCAGAGGAAGAGAAGCAGCAGTGTCCTGGTGCTTCGTTGGCTCTACTTCCCCACTCCTGAAGACGAGCACCTCGTGGTCAGGATGGGCATGAAGAAAGCCAAGTATTATGGCAACTACAGCAAGCACTTTCCCCAGACAAAGTTCCACCTCTGGGAAGAAATGGATGGACAGATCTACCGTCTGCTGATCCTGAATGTGTCCCTGGAGGACGGGGGCAACTACACCTGTAAAGTGCAGGAAATACGGAAGCACAGAAACAAGTGGAGGGCCTCGTCAAATGGAACAGGGAGCATGGAATTACGAGTGCATCATATACCAAGCACAGAAAAAGCTGATGTCATATGGCGCATGTTTGAAGATTTGTATCTGTGTGCTGTGCTCATCTGCTCTATCGGTCTGGTCTGTATGCTTGTCTTTGCCATGACTATCACATGTCAGCACCTGCAGCACAAACGAAGACTACGAGCCAATTATTACCTAGTGAAGTGCCCAGAAAACAGCTCAGGAGAGACAGTAACCAGTGTGTCCAGCTCCTCTCCTGCAATGCACAGAAAAGAGAAACGACACAAACCACAGCTCAGAGACGTCACTGAACCACTACCACCACCACAGATTCCAGCTAAAGCACCCGTACCAAGAAAACCACGTAGAACTAAACTTTTAAAGCCACAACCTACAAAAATGCCAAGGGTGGTAGAGGACAGTCTGACATACGCAGAGCTGGAGCTGGTGAAACCGAAGCCTGAGCTGAAAACAGACTTGACTGGATGTGCACAACTTGAGCCCAAAACAAACGGGGACTGCACGGGGACTGTATACGCCCAAATAATTTTTGTGGAGAAGCAAGTGTAAATATGTATATTAAAGAGTTTCATACCAAAATTATTTATGAGATTGTTTAAAATATTTTTTACCTTACGTACAGATGTTCTGGTATTTCACATATACTAGTACTACTAGTATAAATCTGTAATGCAACAGCAGCATTTTCTTTTTATGTATTTGGGCACATTTATGTACCTATAGATTTGAGACCTTTGTTTCTTTAGCAAAAAAGAAATGATTACATTGTGGATTTAACTCCAAACATGGGTAATTTGATTATGCAATTTTGTAAAATATGTAACAAATTTATTTTTTGCTATGTTGTATGAAATAAA

Function

symbol description
vstm4a Predicted to be located in membrane. Predicted to be integral component of membrane. Orthologous to human VSTM4 (V-set and transmembrane domain containing 4).

GO:

id name namespace
GO:0003674 molecular_function molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08908244_08917212.mRNA True 1601 mRNA 0.43 8 8907936 8917596

Neighbor

gene id symbol gene type direction distance location
CI01000012_08841980_08849453 NA coding downstream 58379 8841521 ~ 8849557 (-)
CI01000012_08805894_08831322 ARHGAP22 coding downstream 76614 8805894 ~ 8831322 (-)
CI01000012_08745512_08773403 PTPN20 coding downstream 134533 8745227 ~ 8773403 (-)
CI01000012_08712109_08714569 GDF10A coding downstream 191949 8711713 ~ 8715987 (-)
CI01000012_08686460_08701212 NA coding downstream 206724 8686460 ~ 8701212 (-)
CI01000012_08940340_08945093 DRGX coding upstream 22072 8939668 ~ 8945424 (-)
CI01000012_08947834_08963715 ERCC6 coding upstream 30100 8947696 ~ 8963812 (-)
CI01000012_09001061_09005079 CXCL12A, CXCL12B, CXCL12, A-SDF1A, SDF1 coding upstream 83097 8998826 ~ 9005079 (-)
CI01000012_09068458_09070536 NA coding upstream 150774 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA coding upstream 153895 9071371 ~ 9073457 (-)
G74808 NA non-coding downstream 43413 8862377 ~ 8864523 (-)
G74816 NA non-coding downstream 54931 8851072 ~ 8853005 (-)
G74867 NA non-coding downstream 67756 8839790 ~ 8840180 (-)
G74842 NA non-coding downstream 150742 8756985 ~ 8757194 (-)
G74841 NA non-coding downstream 157490 8750230 ~ 8750446 (-)
G74882 NA non-coding upstream 73442 8991038 ~ 8991246 (-)
G74885 NA non-coding upstream 75625 8993221 ~ 8993420 (-)
G74887 NA non-coding upstream 77014 8994610 ~ 8994899 (-)
G74921 NA non-coding upstream 422604 9340200 ~ 9340405 (-)
G74701 NA other downstream 540293 8367019 ~ 8367643 (-)
G74648 NA other downstream 642282 8264329 ~ 8265654 (-)
CI01000012_07356934_07358497 NA other downstream 1549391 7356863 ~ 7358612 (-)
G72629 NA other downstream 2760442 6147011 ~ 6147494 (-)
G72294 NA other downstream 3442079 5462840 ~ 5465857 (-)
CI01000012_09082056_09083285 NA other upstream 165140 9081877 ~ 9083489 (-)
CI01000012_09400481_09401810 EIF4EBP2 other upstream 480480 9398076 ~ 9402378 (-)
G74982 NA other upstream 658052 9575648 ~ 9576149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location