trnat-agu_4


Basic Information

Item Value
gene id trnat-agu_4
gene name NA
gene type coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035913.1
NCBI id CM008316.1
chromosome length 28317440
location 6546704 ~ 6546777 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>trnat-agu_4
GGCGCTGTGGCTTAGTTGGTTAAAGCGCCTGTCTAGTAAACAGGAGATcctgggttcgaatcccagcagtgcct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
trnat-agu_4 True 74 tRNA 0.57 1 6546704 6546777

Neighbor

gene id symbol gene type direction distance location
LOC103025849 NA coding upstream 25916 6504153 ~ 6520788 (+)
LOC103045401 schip1,LOC108424074,LOC105909745,LOC108280660,LOC101468843,LOC107750091,LOC107551285,LOC102778146,LOC103369651,LOC106580942,LOC100701131,LOC107081925,LOC108240933,LOC103148079,LOC106612913,LOC102193686 coding upstream 45748 6005866 ~ 6500956 (+)
mfsd1 mfsd1,LOC106580941 coding upstream 544244 5982410 ~ 6002460 (+)
LOC111194497 NA coding upstream 581329 5964776 ~ 5965375 (+)
gfm1 gfm1 coding upstream 597301 5935188 ~ 5949403 (+)
trnat-agu_5 NA coding downstream 170 6546947 ~ 6547020 (+)
trnat-agu_6 NA coding downstream 577 6547354 ~ 6547427 (+)
trnat-agu_7 NA coding downstream 897 6547674 ~ 6547747 (+)
trnat-agu_8 NA coding downstream 1979 6548756 ~ 6548829 (+)
trnat-agu_9 NA coding downstream 2375 6549152 ~ 6549225 (+)
G149800 NA non-coding upstream 81824 6463101 ~ 6464880 (+)
LOC111194498 NA non-coding upstream 572852 5969633 ~ 5973852 (+)
G149768 NA non-coding upstream 580273 5966160 ~ 5966431 (+)
G149766 NA non-coding upstream 586764 5954405 ~ 5959940 (+)
G149760 NA non-coding upstream 596363 5949851 ~ 5950341 (+)
G149934 NA non-coding downstream 194749 6741526 ~ 6745025 (+)
G149938 kpna4 non-coding downstream 206241 6753018 ~ 6763106 (+)
G149944 NA non-coding downstream 223187 6769964 ~ 6827772 (+)
G149952 NA non-coding downstream 257702 6804479 ~ 6807042 (+)
G149960 NA non-coding downstream 346539 6893316 ~ 6893651 (+)
G149754 NA other upstream 819284 5725269 ~ 5727420 (+)
LOC103023972 porb,LOC108424088,LOC108280677,LOC106580677,LOC106612446,LOC107728227 other upstream 1287843 5227918 ~ 5258861 (+)
LOC103032635 LOC103032635,LOC108424091,LOC107680074,LOC107703976 other upstream 1346719 5196141 ~ 5199985 (+)
LOC111194607 NA other upstream 1431988 5111324 ~ 5114716 (+)
G149595 NA other upstream 1444346 5090982 ~ 5102358 (+)
c17h3orf80 NA other downstream 36269 6583046 ~ 6586369 (+)
G149984 LOC108444119,LOC108444125,LOC108412201,LOC108416439 other downstream 388564 6935341 ~ 6947936 (+)
LOC111194506 NA other downstream 702388 7249165 ~ 7251366 (+)
G150099 NA other downstream 1222907 7769684 ~ 7805254 (+)
G150131 NA other downstream 1327863 7874640 ~ 7879301 (+)

Expression


Co-expression Network