CI01000012_08940340_08945093 (DRGX)


Basic Information

Item Value
gene id CI01000012_08940340_08945093
gene name DRGX
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8939668 ~ 8945424 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08940340_08945093.mRNA
AGTCACAAAGACATCTGGTCACTCCCTCCTTATGTGCGCGAGAGCGGATAAACTGGAGCGCTCAGTGATTGACGGTGGGAGTGCGATTGCTCTGCTGAGGTTGAGCAGGAGACTCGAGAATCGCGATTGCATAAAGACCATCTATTGGTACAGATGTTTTTGTTTTGTTTTTACTTCAGATCGGTTGCAGAGAAGTAGAAGTATTGTTTAAAGTTATTTTTTAAAAACGCAGATTATTGCAGCAATAGTTGGAGAACATCACTGTTGACGTGTGGCCATTTTTTTCTTTGCAGAGTGAAATATTCTCTCCACTCGCAAAGCACCGGGAAACATGTTTTACTTTCACTGTCCTCCACAGTTAGAAGGAGAGTGCTGCAGGACCAATACATTGAACACAAATGGGTTTGGGAATCACGCCTCTGGAGACTTTGATGACGGTTTTCTGCGCAGAAAACAACGCAGAAACAGGACAACCTTCACTTTACAACAGCTGGAGGCTTTGGAGGCGGTTTTTGCTCAGACCCACTATCCAGACGTGTTTACGAGAGAAGAGCTGGCTATGAAAATCAACTTAACAGAGGCTCGTGTTCAGGTGTGGTTTCAAAACCGACGAGCAAAGTGGAGAAAAACGGAGAGAGGAACTTCGGACCAGGAAGGAGGCAAAGAACAAATGAGTGAAGGCGCCCCTCCTGCAAGAAACCTCAACCAGTCTCCTGTTGAGCATGGCAGAAATAAGAAAGAACCAATGGAACTACAGCAGAATATTAACAGAATGGTGGGTTCAGGTGGACCTTTTTTCCCATCTTGTCTGCCTGGGACTCTGCTGAACACAGCCACTTATGCACAAGCCTTGTCACAAGTGGCAACTTTAAAAGGAAGTTCATTGTGTTCCTGCTGCGTGCCTGACCCAATGGGCCTCTCCTTCCTGCCACCATATGGGTGCCAGAGTAACCGGACAGCCAGTGTCGCAGCCCTGCGGATGAAAGCCAGAGAACATTCGGAGGCCGTTCTTCAATCAGCTAACCTGCTGGGAGCAGGGTCTACAACCGGGCCCGGAGCAGGTCCAGGGGTCGGTCTGGGACAAAGCACTGTTTCTGCAGGAGGAAGCGATTCCAGTCCTAACTCCGGTACCTCTAAGATCACATCACTACGGAGAACTCCAGACAAGCATCTGCACTGCCAAAAGGAGGGTCCGGATAAGAAATGAGGGAATCCTGGTTATTGTTTTTTTTTTCCTAATTGGAGGACACACTTTGGATGAAGGATTTATAATCAAACATTGAATGCCTGCTGCCTCTTTTTTGAGAGCACTGACATACCCTGGACAGGACGGTGTTAAGTGCAATCCCTTATTGTGTATTTTGTGTGTATGTATGTGTCAAACTAATTATTCAATTGTAATTTTTCCTCTCCTCGTTCACTTTTACACATGATTCTTGACATTGGTTTGCCCCGTTTGGGTCTACGTGGGCACCTGGCGCTGCAATTTGCGTGGTGGAATGACTTTTGAACATGCTGTGTGACAAAAGAAAACTCCCTGGTTGTCAATGTGAACTTCTTTAATTTTTCACAATCCACTTTGATGTTTGACTTGTGTATTGTGAAGTCAGGTGATGATAGACATTCTGCATTGTGTCAAGATATATGCCATGCTGAAATGTAAATGTACTAATGTGAAATAATATATGTAAGATAATATCAAGGACAGAACTGTATATTAAGTGGTTTGTCATGTTTTATGATATGATCCGGGTAACTCTTATTCATGCTGATGTGATGACAACTGACACCTCTCTTGTCGTCACATCTGTACGTCCGTGATAGACTGCAAGAGTCCACACACTGGTCCTGCTTTGACATGTTCTGTAAAACAATTAAA

Function

symbol description
drgx Predicted to enable DNA-binding transcription factor activity, RNA polymerase II-specific and RNA polymerase II transcription regulatory region sequence-specific DNA binding activity. Predicted to be involved in regulation of transcription by RNA polymerase II. Predicted to act upstream of or within regulation of transcription, DNA-templated. Predicted to be located in nucleus. Is expressed in nervous system and trigeminal placode. Orthologous to human DRGX (dorsal root ganglia homeobox).

NR:

description
unnamed protein product

GO:

id name namespace
GO:0043565 sequence-specific DNA binding molecular_function

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08940340_08945093.mRNA True 1879 mRNA 0.45 6 8939668 8945424

Neighbor

gene id symbol gene type direction distance location
CI01000012_08908244_08917212 VSTM4A coding downstream 22072 8907936 ~ 8917596 (-)
CI01000012_08841980_08849453 NA coding downstream 90111 8841521 ~ 8849557 (-)
CI01000012_08805894_08831322 ARHGAP22 coding downstream 108346 8805894 ~ 8831322 (-)
CI01000012_08745512_08773403 PTPN20 coding downstream 166265 8745227 ~ 8773403 (-)
CI01000012_08712109_08714569 GDF10A coding downstream 223681 8711713 ~ 8715987 (-)
CI01000012_08947834_08963715 ERCC6 coding upstream 2272 8947696 ~ 8963812 (-)
CI01000012_09001061_09005079 CXCL12A, CXCL12B, CXCL12, A-SDF1A, SDF1 coding upstream 55269 8998826 ~ 9005079 (-)
CI01000012_09068458_09070536 NA coding upstream 122946 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA coding upstream 126067 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA coding upstream 136453 9081877 ~ 9083489 (-)
G74808 NA non-coding downstream 75145 8862377 ~ 8864523 (-)
G74816 NA non-coding downstream 86663 8851072 ~ 8853005 (-)
G74867 NA non-coding downstream 99488 8839790 ~ 8840180 (-)
G74842 NA non-coding downstream 182474 8756985 ~ 8757194 (-)
G74841 NA non-coding downstream 189222 8750230 ~ 8750446 (-)
G74882 NA non-coding upstream 45614 8991038 ~ 8991246 (-)
G74885 NA non-coding upstream 47797 8993221 ~ 8993420 (-)
G74887 NA non-coding upstream 49186 8994610 ~ 8994899 (-)
G74921 NA non-coding upstream 394776 9340200 ~ 9340405 (-)
G74701 NA other downstream 572025 8367019 ~ 8367643 (-)
G74648 NA other downstream 674014 8264329 ~ 8265654 (-)
CI01000012_07356934_07358497 NA other downstream 1581123 7356863 ~ 7358612 (-)
G72629 NA other downstream 2792174 6147011 ~ 6147494 (-)
G72294 NA other downstream 3473811 5462840 ~ 5465857 (-)
CI01000012_09400481_09401810 EIF4EBP2 other upstream 452652 9398076 ~ 9402378 (-)
G74982 NA other upstream 630224 9575648 ~ 9576149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location