CI01000012_08947834_08963715 (ERCC6)


Basic Information

Item Value
gene id CI01000012_08947834_08963715
gene name ERCC6
gene type coding
species grasscarp (Ctenopharyngodon idella)
category of species economic fish

Chromosome Information

Item Value
chromosome id CI01000012
NCBI id null
chromosome length 13770000
location 8947696 ~ 8963812 (-)
genome version v1_2015/06_NatureGenetics_grasscarp_Genome

Sequence

>CI01000012_08947834_08963715.mRNA
AGTTTCCCTTTTATTATAATATTCTTACTGTGGTGTCTAAGATGAAACATATCCAAAATTACAGTCTTAGATCATCCTTATTCACAGTTACTTAGCAATGCCAGTAGAAGGTAACAAGGACCAGGCCCTGCCTTCCCTGTCCAGTCCTGTCAGTGCCCTTACTCCTGGAGTCCAAGAAGACAATGGCCTTTCCATCCCAGGAAGCAGTAAAGAAGAGCCGGCAGCTACATGTCCAGAAAATGTTGGGTCACAGAATCCTAGAAAATCGCAGCCCTTACTCCACATCAACCGTCAGGAGATCCGATCAGTGGACCACAACTCTCAGGCTGCCGAGCTGCAGGGTTTGGGAGTGGATGTGTATGACCAAGATGTTCTCGAGCAAGGTGTGTTGCAGCAGGTGGACAGGGCCATTCAGGAGGCCAACCAGGCTGCGGCCAAAGCAGAGGCTGAGAAAGAATATGAGTCCGTACTGGATGATGTCAGGTCATGTACAAGTGCTTTGAAGCACATCAACAAAATTTTAGAGCAGTTAGCCCCTCATGCTGCCTCTAGCAAGGACATCAGTCGGAAAATTGAGTCTGTCAAACGGCAAAAAGAGAACAAGGAGAAGCAGTTAAAAAAGATCAGAGCCAAGCAGAAGAGACTGCAGGCTGTTCTTGATGGAGAGGATATCCAGAAGCTTGAGGCAGAATTATTGATTGAGGATGACGAAGAACCAGGCCCATCCACTCTGGGCAGCATGCTTATGCCAGCTCAGGAGTCCGAATGGGAAGAGCTCATCCGCACAGGTCACATGACCCCCTTCGGTTCACGGATCCCTCAGAAGCAAGAGAAGAAAGAGCCTCGAAAGGTTATGCTCAGTGAGAACTCCGGATTTGACAAGTACCTCGCTGACCAAGCCGTGTTAGCGGATAGCAGGAGGAGACCAATGAAGAAGAAGATCACCAAGAAGCATTCAGGAGAGACAACGCATGGCAAAGGGCAAAAGAACGGATCCCTCTCCAGCAAAGATAAGAAGCTCCAAAAGCGAATGCGTAAGCTCCAGAGGACCGCCTTGAGGGCTCACCCCAAAGCCAGGCCCAAGGTGGAGAAGGAGCTGTCCCGAGCCAGGAGGAGGAAAGGTGATGGGGAACAGACGTCAGATAGCGAGGGTTCGGAGTATGTCCCGAGTGATGAGCTGATGGATCCTGAGGAGCCAGATGGAGATGATGATGATGAGTTCTGGGTGGATAAAGATGAAGAATACGAACTTAAACCATACAAGAAGAAGAACCAGGCCAAAACCAGAAAACCCAAAAAGGAGGATGAGAGCGACGAGTACTTTCCTAGCAGCTCGGAGGATGAAGACTCTCAGAAAGGCGGAAAAGTCAAGAAATGTAAAGATGATGGAGATATCGAGTGTTACAGGCAAAGGATTAGGAAGTGGAAAAGACAAAGACTTCGGGAAAAACAGGCAAAGAGAGAAGCAGGAGAAGAGGAGTCAGAGGAGAGTGAAGTGGAGTTTGATGAAGGATTTAAAATGCCTGGTTTCCTCTGGAAGAAACTCTTCAAGTATCAGCAGACAGGTGTCAGGTATGCTGGACTGGGGCCCACAGTCATTGTATGTCCGGCGACAGTCATGCATCAGTGGGTGAAGGAGTTCCACACATGGTGGCCTCCTTTCCGTGTTGCTGTCCTCCACGACACGGGCTCCTTCACCAGCAAAAAGGAGAAGCTCATCCCGGAAATAGTGGCCAGTCACGGCATCCTCATCACTTCCTACTCATACATACGCATTATGCAAGATTACATACAGAAGTACGACTGGCATTACATCATCCTGGATGAGGGCCACAAGATTAGGAACCCCAGCGCTGGGGTGACTATGGCATGCAAGCAGTTCCGGACACCCCATCGTTTTATCCTCTCGGGCTCACCCATGCAGAACAACCTCAAAGAGCTGTGGTCGCTCTTTGACTTTGTGTTTCCAGGGAAGCTGGGGACTCTGCCTGTCTTCATGGAGCAGTTCTCTGTGCCCATTACCATGGGAGGATACTCTAATGCGTCTCCAGTTCAGGTCCAGACAGCCTATAAATGCGCTTGTGTTCTTCGTGACACGATTAACCCTTACCTGCTGAGAAGAATGAAGGCTGATGTGAAAGCAAACCTCTCTTTACCTGACAAAAACGAACAGGTCTTGTTCTGCAGATTAACGGAAGATCAGCGGCAGGTTTACCAGACTTTTTTGGACTCCAAAGAGGTTTATCAAATTCTGAATGGAGATATGCATGTCTTCTCAGGCCTCATAGCTCTGAGGAAGATATGCAACCACCCGGATCTGTTCACAGGCGGGCCGCGTTTGCTCCGAGGCATCCCTGATGAGCAGCTGACCGAGGAGGAGCACTTTGGTTACTGGAAACGCTCTGGGAAAATGATTGTGGTGGAGTCACTGCTGCGCCTGTGGTTCAAACAGGGACACCGAGTTTTGCTTTTCACCCAATCCAGGCAGATGCTGGAGATCTTGGAGGTGTTTGTGAGGGAGAATGGCTTCTCCTATCTCAAAATGGATGGCACCACTACCATTGCGTCTAGACAGCCTCTCATTGCTCAGTACAACCAGAACAAGGACATCTTCGTCTTCCTCCTGACAACAAGAGTTGGCGGTTTGGGAGTCAATCTGACTGGAGCAAATAGGGTTGTAATCTACGACCCAGACTGGAACCCCAGCACAGACACTCAGGCTCGTGAGCGTGCCTGGAGGATTGGGCAGAAACAGCAGGTGACGGTTTACAGGCTGCTGACAGCTGGAACCATTGAGGAGAAGATTTACCACAGACAAATCTTCAAACAGTTTCTCACCAACCGAGTGCTAAAAGATCCTAAGCAGAGACGGTTTTTCAAATCTAACGACATTTATGAACTTTTCACGCTGAGCAGTCCTGACGGCTCCCAGGGAACAGAAACCAGTGCAATATTTGCAGGCACAGGGTCAGATGTGCAGGTTCCGAAAAGACACAAGACCTCTCATCCATCTCAGGTGACCTCGAGACCATCACAGTCTCATTCATCTGCATTTTGCGACCAAGATCAAGATTCCACATCTCTATCAGGAAACAGAAACGCTACCTCAGTCAACGGACTCTCAAACAACAGTGCTTCTGGGTCACCAAACAATAACACTGAACCTCATTCCATTGCTGACCATTTGACAAACAGCACTAGTAAGGACCTTTCTTCTACGAACAGCCCTCAAAAGCACAGAGAGAAGAAAAAGCACTGTGAAATGCCAGAAAAGGACACGTTACCCTCAGACGGACACAAGCGCAAGCATAAAAAGCGCAAGCACTCTGAGGACGCCAGGTTTGAGGGCTGCCGTATTTCTCACCTGGTGAAGAAAAAGAGGTACAAGAAAGAGTTAAAAGAGGAAGAGGAAAAAAATGAGAAAAAGAGTGATGATTATGTTCTAGCCAAACTCTTTCAAAAATCAGGGATACACAGTGTCATGAAGCATGACTCCATCATGGAGTCATCGAACCCTGACTATGTACTTGTGGAAGCTGAGGCCAGTAGGGTTGCGAAAGATGCGCTGAGAGCTCTGAAGGTCTCCAGGCAAAACTGCAGGCTGCCTTTCTCAAGAGGGTCTATGACAACAACCCCACCTCCAGTCAAGAGAAGGTTTGGACAGAAGAAAAACTCACTTCTTTCTCAGCCATCTGGGACAACGGCAAAAGCAGGAGAGAAATGCAAGGATGCGGATATTATAAAGAAGTCAGTGGTAAAGAAGCCAGGATCTGCTGCTCACTTCAGCGGTGAAGGAGCACAGGAGGAATCTGCTTCTCTCTCCTCATCCTCTCTCCTCGCTAGAATGAGGGCCAGGAATCACCTCAATCAACCCCAGAGACAAGAGGAAGAGGAAGAGAGGGAGACTCAGTCTGCCGCCGTGCATGCGACTCCTACAGAACACGATGAGCTTCTGGTTGACCTGAGAAACTTTGTGGCCTTCCAAGCTCAGGTGGATGGCCAGGCGAGCACCAAGGAGATCCTGGAGTACTTCACCCCGAGACTCACTTCCACACAAACACCAGTGTTCAGAGAACTGCTGAGAAATATTTGTGAGTTCCACAGACTTCCTGGGCAGGAAGGGATGTGGAAGCTTAAAGCTGACTACAGGTAAATGGAGCGGAGCATATTAAAAGCTATTAACTGAGAAGCTCCAAACGGAACGTGTACCTCACACTTGGGAATGCAGGTGATTCGATGCATAAATTATTTTTAGATTATGAAATGTGTAAATGCGATTAATTTCAATAAA

Function

symbol description
ercc6 Predicted to enable ATPase, acting on DNA. Acts upstream of or within cellular response to DNA damage stimulus and response to UV. Predicted to be active in nucleus. Human ortholog(s) of this gene implicated in several diseases, including Cockayne syndrome (multiple); De Sanctis-Cacchione syndrome; UV-sensitive syndrome; age related macular degeneration 5; and primary ovarian insufficiency 11. Orthologous to human ERCC6 (ERCC excision repair 6, chromatin remodeling factor).

NR:

description
unnamed protein product, partial

GO:

id name namespace
GO:0006974 cellular response to DNA damage stimulus biological_process

KEGG:

id description
K10841 ERCC6, CSB, RAD26; DNA excision repair protein ERCC-6

RNA

RNA id representative length rna type GC content exon number start site end site
CI01000012_08947834_08963715.mRNA True 4291 mRNA 0.48 19 8947696 8963812

Neighbor

gene id symbol gene type direction distance location
CI01000012_08940340_08945093 DRGX coding downstream 2272 8939668 ~ 8945424 (-)
CI01000012_08908244_08917212 VSTM4A coding downstream 30100 8907936 ~ 8917596 (-)
CI01000012_08841980_08849453 NA coding downstream 98139 8841521 ~ 8849557 (-)
CI01000012_08805894_08831322 ARHGAP22 coding downstream 116374 8805894 ~ 8831322 (-)
CI01000012_08745512_08773403 PTPN20 coding downstream 174293 8745227 ~ 8773403 (-)
CI01000012_09001061_09005079 CXCL12A, CXCL12B, CXCL12, A-SDF1A, SDF1 coding upstream 36881 8998826 ~ 9005079 (-)
CI01000012_09068458_09070536 NA coding upstream 104558 9067906 ~ 9070765 (-)
CI01000012_09071892_09073410 NA coding upstream 107679 9071371 ~ 9073457 (-)
CI01000012_09082056_09083285 NA coding upstream 118065 9081877 ~ 9083489 (-)
CI01000012_09164233_09178383 ZMIZ1, ZMIZ1A coding upstream 200289 9164101 ~ 9179268 (-)
G74808 NA non-coding downstream 83173 8862377 ~ 8864523 (-)
G74816 NA non-coding downstream 94691 8851072 ~ 8853005 (-)
G74867 NA non-coding downstream 107516 8839790 ~ 8840180 (-)
G74842 NA non-coding downstream 190502 8756985 ~ 8757194 (-)
G74841 NA non-coding downstream 197250 8750230 ~ 8750446 (-)
G74882 NA non-coding upstream 27226 8991038 ~ 8991246 (-)
G74885 NA non-coding upstream 29409 8993221 ~ 8993420 (-)
G74887 NA non-coding upstream 30798 8994610 ~ 8994899 (-)
G74921 NA non-coding upstream 376388 9340200 ~ 9340405 (-)
G74701 NA other downstream 580053 8367019 ~ 8367643 (-)
G74648 NA other downstream 682042 8264329 ~ 8265654 (-)
CI01000012_07356934_07358497 NA other downstream 1589151 7356863 ~ 7358612 (-)
G72629 NA other downstream 2800202 6147011 ~ 6147494 (-)
G72294 NA other downstream 3481839 5462840 ~ 5465857 (-)
CI01000012_09400481_09401810 EIF4EBP2 other upstream 434264 9398076 ~ 9402378 (-)
G74982 NA other upstream 611836 9575648 ~ 9576149 (-)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location