G155300


Basic Information

Item Value
gene id G155300
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 591674 ~ 593996 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210572
TTGAGAGTGAAgacatttttcttcttcttgtatcCGTTAGTGATGTCGCAGGCGCAGCCGCTGAGGTTGAGCAGCGGCTCATTGTTGTAGGATGTGCTCGTGTTCTTGGAGTCCTTGTAGAAGCCCAGCTCGCCCTTATTCAGCACGCAGTACAGGTTCACCCAAGATCTGCTGTAATGTGGGAGAAACGGAGACCACAGTGAGCACCAGAGTGTCCACCTGAACATCACTCACCTGCTGCAGCACGAGGGGCAGTCCCGCAGGGCCGAGACTGACCACCTGTGGAGATCACAACCACTCTAATACAGTGCTGGACTTCTGTGGCTTACCTTTGTGGAGAGGCAGGGGAGCAGCCAGGAACAAGGGAGGAACATGGAAGAGAAGAGAGCAAGATTTTGGTTAATGCTAGCAAAGTGttgaggctaatgctaatgctaatgctaaaaggCTTGTGTGTAAGTGGCTGTGGTGTTTTTGGACAAGCGCTCAAACAGCATTCAGTGCTCATGTACATCACTTTACATGTACATgcataaaataaacagacagcCTTTTAAAACTGTCTAAAACTCATTGAAGGGCAATTCCAccaatatttctaaataatttgCATAGGAGTCATTCAGAGTGAgtttggtgcaaaaatccattcaattcaatttaaactATTACCAAGTGGATGATTAAGAACTGAACTAGATATCTGATCAATTTAATGCTCATAATAGCTTGCACAATTGCATGTGATTATTTTCTTTCCTACACTGTAATACTAAAGTGATCCagaatatgaaggaacacataaggaatcatgtagtaacttaaaaatgttaaacaaaccaaaatacagtaatgtaaagcatttagatgctcttatatgtgaagctgttaacttgtggtttctgaggctggtaactctgattaacttattctgtgcaacaaaggAAACCCTTGCTCTTCATTTCCTgcggtggtcctgatgagtgccagtttcatcattatgtttttgatgtttttttgactgcacttaaggatacttttaaagttcttgaaatgttttagattgactgacgTTAATTTCttaaactattttttctttacttagttaagtagttcttgccataatatggattagaacattattcaaatagagctattcactgaataccaactctacctctttacaactcaaacacattaatattttaaaatataaatataaaaataaataattggatgtttttcttcatagtgtAGATGACTTAGTTTTAATCCACCtgaatttaagttgttcaaacttttaactggtactgtataactCACACATGATCAAGCAGTAGAGAGTTTTcacacctaaaaaaaacattttatttctgttcataaaaatagtgttactctactgttacagtagatacagaaacaaCCAGCATAATCTGTGGATCGCATACTGCTGCATGACACATGTGCATGTAAAAGGGAGTCAGATTTCAGCAtaacaccagttctttttcttcttctattgtttaaaggGTGAAAATAGCTTCCCTCAACTTGCTGTAGTTGAAATGTAACCACGTTATTAACTTTTCACACCTAAAATTTTGGTTCGGCCCATATAAGGCAGGTGGGAATTCTTCGTTAAAGCCCACTCTGAAAATTTTTTATCTCAAACAATAATTTATGCAGAGAATTTAGTAAAATTGGTGGACGCTCCTTTAATTAAATGAGTCAATATGTGTCTTGGCCTGAGGGGGAAGGCAGGTGATCTCCGCTGTTGTGGCCGACCGAAGCTGAGTGATGCGAAGCTGTGGATGTGGCGCGGGATGCATACCTCACCGGCGTCTGAAAGCACTGTGGTTCTTGGTCTTCTGCCACAGCTGTGTCCACCAGGAGGGCCAGCGGTGGCTAACGTGGCATCATGCAAAAGTGCAAGCTGCGCTAATGGCCACTTCATGCCATTCGCGGGTTAGAAATGGGTGCTATGAAAACTTGAATCCATGAAAGCAGGTAAAATGTGtaccatatatttatttacagtacagtgTCTGTGTCATTTCCAGTCAAAACAGTCACTAAGTACAAATGAATGACCtaaagactatcaaaaacttCTATTGAACAGAAAacctttaatttttatttacctTCTACCCAAGTTCCAAAGCATTCCTCTTcatctgttaaacatttttgtttttacattttttagaaaaaattatttacatttccaTTTTTTGTTCTGTGTTCTGCAAATGTTCTTCTGTTCTCTcttaataagagaccacttaaaa

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210572 True 2291 lncRNA 0.39 2 591674 593996

Neighbor

gene id symbol gene type direction distance location
LOC103040340 LOC108410554,LOC107566291 coding upstream 27898 551929 ~ 563776 (+)
LOC103033531 NA coding upstream 53796 421528 ~ 537878 (+)
LOC103034482 NA coding downstream 84999 678995 ~ 681903 (+)
blvrb blvrb,LOC107692505 coding downstream 110359 704355 ~ 713021 (+)
sertad3 NA coding downstream 119913 713909 ~ 718705 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding downstream 333723 927719 ~ 952480 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 821411 1415407 ~ 1457526 (+)
G155283 NA non-coding upstream 1470 587842 ~ 590204 (+)
G155290 NA non-coding upstream 94534 493411 ~ 497140 (+)
G155250 NA non-coding upstream 192060 395765 ~ 399614 (+)
G155233 NA non-coding upstream 230977 344963 ~ 360697 (+)
G155234 NA non-coding upstream 260400 330837 ~ 331274 (+)
G155328 NA non-coding downstream 101530 695526 ~ 703112 (+)
G155332 LOC108443044 non-coding downstream 126299 720295 ~ 724186 (+)
G155336 NA non-coding downstream 154838 748834 ~ 749156 (+)
G155357 NA non-coding downstream 220757 814753 ~ 816758 (+)
G155436 NA non-coding downstream 320400 914396 ~ 916240 (+)
G155206 NA other upstream 438411 149347 ~ 153263 (+)
LOC103044527 NA other downstream 509454 1103450 ~ 1106792 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 593150 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 609745 1203741 ~ 1223350 (+)
G155776 NA other downstream 2144365 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 3017022 3611018 ~ 3614491 (+)

Expression


Co-expression Network