G155436


Basic Information

Item Value
gene id G155436
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 914396 ~ 916240 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210777
aGCGATAACATAGAAGCCAATTTAAACAAAGGTATTACAGAACAGTACTTCTGTTTACGTGTTTACGTACATATCCATTCAGATCATTTTCTATATTCATAAAACAGGATAAAAAGAGGTGTCGATACACAGAAGGCTAAAACAATAACAGAACATGTTAAACAGTATAGGTCAACTCTCGTATatctcattaaaaaaagagaaatgtgtgtaaagAACAATCACTGACATGTAAGGATGGCAAAAAACAACATATCTGGAACAtcattgtagaaaaaaaagaaaaacaaaacagaacagaatcTGTTTTCACAAAAATTTACCTCCCAACAACTGATAACAgggttaaaatacaaaatatagtgATCTGCtaacacttaaaaatgtactttgtgTTCACCCAGACAGGCTTAAATATACGATTCCCAACATGAATTCCCCAATAAATGTCGTCGTTATTTTAAGgaaagacgttttttttttttttaccacaaaaaTATAGGCTAAAGCATCATATGATACAACAAATTTTCAGCATGTCTATCTTTGGTTTTTCTGTCCATTCAGATACTTAGTGGTACATAAAGCAATACGATATAAAATCTATAGATTGCACATCTATAACCATTGAAAGGGAGTATTTCTTACAATCTACatatagtataaaatataaagagagTTTTCTATTATACATGCTGGGTTAAGCTTTGAATGGGCATAGTTAAGCATTTTCAAAAGAcctcatttcattttccaaaactacTGACTGTGTACGCAGCATTTgcaagaatacaaaaaaaagtgtgtgtgtgtgtgtgtgtgtgtgtacagtgctCTGATTGTGGCTCTTAAAGCCTTGAAACAATCCTGCTGTACAATCTATACCTGTCTGGTGTTTCAGGACATTCAGGGATGTCATTATTCATTCTACTGTACTTTTAAAAGGGAATCCCACCCAGAATTCTCTGCATAACTCAATAAATTAAGACAATCAAGGTCATTTAAAGtgggttattattattacaccaAACGATTATGAACACACTGCCTGATGCTTGAGACACTGTTTCTCTAACATTTTGAGAAGAGCttggctttaaaaataaaatatcaaagaaAATGGATTTTACGTCGATCTGAGTTGGTAAGTTTCACTACAAAGAACCAGAATTTCTCAATAAACCAATTGAAATTATGCAGAGAATTTAGAAAAATCGCGGGAGTTCCTCTTTTAAGATGTATTATAGTGTAGTTAAcactaaaggtaaaaaaaaaactgggttGACGACCCACaaactttcattaaaaaaaaaaaacgctttaacAAGCTCTACTTTAAAGCACTGTTACATGTTGGGGCAAAAAATAAACTCTGTTGGAGCCAACAGATAAAACTGATTGTACTGCAGAAGGGCATCGACGGGGCATCTCCAATCAGCATGGCTGAGCTCTCCTTTACTGTGGCCGGcagagcggagagagagaaagagaaagagggagggagagagacagagagggaaagaaacgGGGAGAAAAGATAGGAGGACAGAAAGAATTAAACAGAGTGTGATATGGCTGGTTAGAGAAGGAAAATGGCAGGAATAGAAGGAAAACACAGGGACAAAGTGTAGGAAGAGGGATGGGAATTGAGAGATATAGAGGGTAAAGAGAGGGACGGAGAGATGGAAGAAAAGAGCAGGTGAACAGTCTTCTCTTCAGTGAGGTGGCAGGGTGGTCTTTGGGGTCCAGGGCTGTAGGTTCTTAAAGTAAAGAAACCCttcctaaaaaacaaaacaaacaaatgcattatatcat

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210777 True 1815 lncRNA 0.36 2 914396 916240

Neighbor

gene id symbol gene type direction distance location
sertad3 NA coding upstream 195691 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 201375 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 232493 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 350620 551929 ~ 563776 (+)
LOC103033531 NA coding upstream 376518 421528 ~ 537878 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding downstream 11479 927719 ~ 952480 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 499167 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 650875 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 736414 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 746738 1662978 ~ 1673194 (+)
G155357 NA non-coding upstream 97638 814753 ~ 816758 (+)
G155336 NA non-coding upstream 165240 748834 ~ 749156 (+)
G155332 LOC108443044 non-coding upstream 190210 720295 ~ 724186 (+)
G155328 NA non-coding upstream 211284 695526 ~ 703112 (+)
G155300 NA non-coding upstream 320400 591674 ~ 593996 (+)
G155457 NA non-coding downstream 99002 1015242 ~ 1034453 (+)
G155455 NA non-coding downstream 192258 1108498 ~ 1113600 (+)
G155478 NA non-coding downstream 223734 1139974 ~ 1148922 (+)
G155483 NA non-coding downstream 232968 1149208 ~ 1236789 (+)
G155487 NA non-coding downstream 244269 1160509 ~ 1168023 (+)
G155206 NA other upstream 761133 149347 ~ 153263 (+)
LOC103044527 NA other downstream 187210 1103450 ~ 1106792 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 270906 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 287501 1203741 ~ 1223350 (+)
G155776 NA other downstream 1822121 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2694778 3611018 ~ 3614491 (+)

Expression


Co-expression Network