G155455


Basic Information

Item Value
gene id G155455
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1108498 ~ 1113600 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210799
aaaaaaaaaaaaaaaaaaaaaaaaaaaacgaacaaaaaaaattattctatGACATTTCTCAAATCGTCCTCCACACCAACCACAGCCGGATTCGGACACAATACTGATTTCGTAACCATGTTAACTGGTTTAATCAAAAAATATCTATTAACATTTGTCTGTAATATCTGAGAAGACGAGAACTGATACACTTGTGTATTTACAAAGGCTTAATGAATGAGTTTCAAATACAAtgaatatatctttttttaatatatatattttatatagatttctttctctctatagaCGCCCGGGGCATTCCACTAGTGTTCAGTCATCTAGTCCAGTTTTTTGATCCATTTCATCCTGAGCCAGAATTCAGTCTATTTgaacagaatcagaatcagactcGGTCTGATCTCATGTTAATTCTGCTCCACAGTCCTGTCTCAAAATTCACGGGTCTTCTGGAGGGACCGGCACAATGTGTGCACGCACAGAGGCTAACACTgacccaagaaaaaaaaaaagcaaaaaaaaaaaaaacactctctctctctcatgctctctcacacacaaacacacaaccccACAGTGAACTGTACAAAAGGTGACTTAAAGAGTGTTTGCACATCAACCTCTCTGTTTTCTGGAGCATTTGAACAATATTCAAGTGtctacatttaaacacacaataatAAAAGAGGACAGTttgatgatggtggtgtgtaGGGCTGCTTGAATAATGggattttttgctttttgactATACTGATTCTCAGAAATGAACCTATGTTTATATAAGTGGAGACATTAAAGATGACCTGCTGCCTTTCTGCTTTTGTCCTGATGGTTTTGACTTGTCTTGCCCATGTTTAATTGAAATGatcatttatcattaaaaagatactttatttcagtaactcaattcaaaatgtgaaactcatatattatatagatgtattacacatagagtgatctattttacacgtttatttattttattgttgatgattatggcttacagccaatcaaaacccaaaaatcagtctctcttaaaattagaatattatattggtatttttgacagtgtgtgcagtgtgccaagtcctgctggaaaatgaaatctgcatctctataaaagttatcagcagagggaagcatgaagtgctctaAGATttcagacttgataataaaacacagtggatcaacaccagcagatgacatgaccctccaaaccatcactgatcatcagtaaatttaacatttcatttataaatcaagggagcagagtctggaggaagagtggagagacacacagtccaaactgtgatggtttagagagtcatgtttcgcattttgaactgaattactgaaaggaaggaacttttcagtgatattttaatttttgaaatgcactagtatatcaGGAGATGATTCTTAAAGGTTCAACCATCATCatcaaaaagtgaaataaatgttctgtattACAGAAAAGCCTAATAAATGATTATGAATTCTATCGTAAAGTACTCTAGACAGTGAGAAGGGGTTCTTTTTCGACTGAGGTGTTCAGAACTGTCACAAATGCTCTAGAAAACAGATGACATGGTATGTGTAAAAGCACAGAAAACATCTGCACAGCCTCAGAATGACCTGCGAGTACAAACATatagaaaaaacacataaaagcagagttataataataataaaaaaaacaacaatcaagACGTTCAGTACCTACAGGGATACAGAGCTTAAAGCATGGCATCCTACATTCAGCACTGCAGGAGAGATAGGCACTCTCACGGACCACTCAGTCTCTGGGGGTCCCGCAAACCTCTGGCACTGATATAACAACAACACAACGAGCAGCTTCTGGAACGACCGCTGACATGGCAAGTTAAAGCAGGGCTGGCGGCGACCCCAATCTGCCACTCCCCCAGTAATACAAAAGCAGCAAAAATGATTCAAAAAAAGCTTGCCAACATGACCAGAGCCTGCAGGTCAGGGACCCTTTCAGTGGATGCTCCTTTTTTGGTGCAGTCTTgagtaggggtgggacaaaatattgatttgcgATTCATTATCGTTACATggcatcaaatattgatattattattaaaacataggcCTCTATATCCCACTCACCCTCAACTTGATTTATTAAAGTTACAGCCTCATTACTGGCAGCGCTAATctaatgaatagggtaaacctgcagtgaagaattATAGTACtgaaattctgtaaaactgacactaataaatccataattccttgtatttactaatttaagagtattttatcctcttcagttacacagttactgtGAATTATTATAGAAAATTGTCACAGTATCGTATTGTGAGATGCCCCATGATTCCAACACCTATTGGGAAAAATATTAAGGTTCAAAACATTGTACGATAAGTTAATAAcaaaattattgtgacaggccaagTCTTGAGAACCTCCATATAAGATAAGAAACCTATACTAGTTCTTTTAGTTTCGCTTAAACCAAAAATCTTGGACTGCAAATTAATTGCCAGTTAGCCTCAGAAATAAATCTGGTCTACTGGTCAGCCTTaaaagcaac

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210799 True 2584 lncRNA 0.36 2 1108498 1113600

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 156018 927719 ~ 952480 (+)
sertad3 NA coding upstream 389793 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 395477 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 426595 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 544722 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 301807 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 453515 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 539054 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 549378 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 578998 1692598 ~ 1905714 (+)
G155457 NA non-coding upstream 74045 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 192258 914396 ~ 916240 (+)
G155357 NA non-coding upstream 291740 814753 ~ 816758 (+)
G155336 NA non-coding upstream 359342 748834 ~ 749156 (+)
G155332 LOC108443044 non-coding upstream 384312 720295 ~ 724186 (+)
G155478 NA non-coding downstream 26374 1139974 ~ 1148922 (+)
G155483 NA non-coding downstream 35608 1149208 ~ 1236789 (+)
G155487 NA non-coding downstream 46909 1160509 ~ 1168023 (+)
G155484 NA non-coding downstream 114451 1228051 ~ 1239373 (+)
G155507 NA non-coding downstream 136384 1249984 ~ 1338723 (+)
LOC103044527 NA other upstream 1706 1103450 ~ 1106792 (+)
G155206 NA other upstream 955235 149347 ~ 153263 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 73546 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 90141 1203741 ~ 1223350 (+)
G155776 NA other downstream 1624761 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2497418 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2815731 3929331 ~ 3932163 (+)

Expression


Co-expression Network