LOC103044527


Basic Information

Item Value
gene id LOC103044527
gene name NA
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1103450 ~ 1106792 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210822
ACACTCgcaacacaccagcgcattcacacaggagagaaaccatattactgTTCAGAGTGTCGGCAGAGTTTTAGAAGGAGCGGAACACTCAAattacaccagcgcattcacactggagagaaaccgtatcactgttcagtgTGTGGGAAGACTTTTAATGTCAACTGTAATTTTCAAAAACACCAGCTGATTCACACAAGAGGGACTTGAATCACTGCTGAGACTGTGGAAACAGTttcagggtgttttcacaccagcactgtttagTTCAGTTAAAACAGACTGATTCCTTTGAACTCTTGGTGCAGTTAGtttcagcaggtgtgaaaacaataATCTCAATCAGgtacagaacaaaacaacagcacCCGCAAGAAGAAGTGGTCTGTTTCcggtcccaaacaaactccGAAGCAATTCACAAATTTTGTGCATTCAGTTTGAAGGTACTTCACACTGCAAAACTATACGCGCTGTTTtggaacacagaaccttcttgctgtatttactttcctgCTCTCACACCAGACAGCCCTGGCCAATCAGAAGAGACAGAGTGCTTGCATGGTTTGTTGGGGCACATTTTGGTACGTGTTGgttttgcctgtgtgaaaacaaaccaaaccTTAAATCTTGTATTCACAACAACTGTAGATCATCTGATGCTGGTTATGGTAACATGAAATATTTTCTCTAAGGaaagtaatttaatttcatttaacatACTGTCACCTTCctatttgtttacttttttttttccttttgcaaa
>XM_007251581.3
TGGAGAAGAAGGTCCCGCTGTGTTTATAAAGAACCCGGAGCTGTTCTGATTAAAGGTACTGCTGATTTTGGACAGAGTCTTCTCTACTTCCAAAACTCATCACAAAACTCCATCAAGAGGACTTTGTCAGACTGTTAAAATTGAGAGATTGAAAGTGAGAACATGATGTCAGAAATATCAAGTAATGAGAAAACATCACCTGCTGCCGACCACATTCCCCCATGCCTCAGAcaaacaacagaacaaaaaaatacaggcaAAAAGAAATCTCACAATTGCAAcgagtgtggaaagagttttacccTGTTGTGTAATTTCagaacacaccagcgcattcacactggagagaaactgtATCAGTGTTCAGAATGTGAACAGAGTTTTACTAACAGTAGTAATCTACGAAGACACCAGCGGATTCACACAGGACTAAAACCTCATCACTCATAaggcatcagcgcattcacactggagagaaaccgtattactgttcaGAATGTGGACAGAGTTTTAGAGAGAGTGGTCCCCTTCAaatgcatcagcgcattcacactggagagaagccTTATCAGTGCTCAGAATGTGGACAGAGTTTTAGAGGGAGTGGTACACTAAAATTACACCAGAGCGTTCATACTGGAGATAAACCATATAACTGCACAGAGTGTGGGAAAAGTTTTACAATGAAGAGTCATCTacaaacacaccagcgcattcacactggcgagaaaccgtatcagtgctcagagtgtgggaagagttttatacAGCTGACTAATCCCCagacacaccagcgcattcacactggagagaaaccgtatcactgctcagagtgcgATAAGACTTTTAAAAGTGGTAGTGCCCTCAAATTACACCAGcatattcacactggagagaaaccttatcagtgctcagagtgtggacAGAGTTTTGGAAGGAGTGGTACACTCgcaacacaccagcgcattcacacaggagagaaaccatattactgTTCAGAGTGTCGGCAGAGTTTTAGAAGGAGCGGAACACTCAAattacaccagcgcattcacactggagagaaaccgtatcactgttcagtgTGTGGGAAGACTTTTAATGTCAACTGTAATTTTCAAAAACACCAGCTGATTCACACAAGAGGGACTTGAATCACTGCTGAGACTGTGGAAACAGTttcagggtgttttcacaccagcactgtttagTTCAGTTAAAACAGACTGATTCCTTTGAACTCTTGGTGCAGTTAGtttcagcaggtgtgaaaacaataATCTCAATCAGgtacagaacaaaacaacagcacCCGCAAGAAGAAGTGGTCTGTTTCcggtcccaaacaaactccGAAGCAATTCACAAATTTTGTGCATTCAGTTTGAAGGTACTTCACACTGCAAAACTATACGCGCTGTTTtggaacacagaaccttcttgctgtatttactttcctgCTCTCACACCAGACAGCCCTGGCCAATCAGAAGAGACAGAGTGCTTGCATGGTTTGTTGGGGCACATTTTGGTACGTGTTGgttttgcctgtgtgaaaacaaaccaaaccaagtgaGAAAACACTCACAGTAAAACTGTCCCTTTAAATCTTGTATTCACAACAACTGTAGATCATCTGATGCTGGTTATGGTAACATGAAATATTTTCTCTAAGGaaagtaatttaatttcatttaacatACTGTCACCTTCctatttgtttacttttttttttccttttgcaaaataaacttttttttgcctAATGTATCCACACATGATGCTGCATGGCCACCtgtggtaaaatctaagaataACTTATGTCAAAATTGTGATTTAAGCCAATTTATTAtgcataaacaaaaataaaatgtgacttATTAGCTTCCTTCACTGAATTAGTTTTTATGATTTAGAGCTCGTCCCAAATTGATGAGATATttactataatataaagtttacttcttattaataaaggcCATAAATATTGTTTAGTTGTTTAGTCTTACTATCTGTCTTTTTAGTGAAATCAAAAATGATTGCTTTTTAAATGGggataaataaagctaaatggcTTAATATACAAACTACTAGTATGGgttattcttttaattaaaaagtaatatacaatttacatttacatttctatTCATTCATCTCCTACCTGTTTCTGGTAACT
>XM_015606424.2
GGAGAAGAAGGTCCCGCTGTGTTTATAAAGAACCCGGAGCTGTTCTGATTAAAGGAGTCTTCTCTACTTCCAAAACTCATCACAAAACTCCATCAAGAGGACTTTGTCAGACTGTTAAAATTGAGAGATTGAAAGTGAGAACATGATGTCAGAAATATCAAGTAATGAGAAAACATCACCTGCTGCCGACCACATTCCCCCATGCCTCAGAcaaacaacagaacaaaaaaatacaggcaAAAAGAAATCTCACAATTGCAAcgagtgtggaaagagttttacccTGTTGTGTAATTTCagaacacaccagcgcattcacactggagagaaactgtATCAGTGTTCAGAATGTGAACAGAGTTTTACTAACAGTAGTAATCTACGAAGACACCAGCGGATTCACACAGGACTAAAACCTCATCACTCATAaggcatcagcgcattcacactggagagaaaccgtattactgttcaGAATGTGGACAGAGTTTTAGAGAGAGTGGTCCCCTTCAaatgcatcagcgcattcacactggagagaagccTTATCAGTGCTCAGAATGTGGACAGAGTTTTAGAGGGAGTGGTACACTAAAATTACACCAGAGCGTTCATACTGGAGATAAACCATATAACTGCACAGAGTGTGGGAAAAGTTTTACAATGAAGAGTCATCTacaaacacaccagcgcattcacactggcgagaaaccgtatcagtgctcagagtgtgggaagagttttatacAGCTGACTAATCCCCagacacaccagcgcattcacactggagagaaaccgtatcactgctcagagtgcgATAAGACTTTTAAAAGTGGTAGTGCCCTCAAATTACACCAGcatattcacactggagagaaaccttatcagtgctcagagtgtggacAGAGTTTTGGAAGGAGTGGTACACTCgcaacacaccagcgcattcacacaggagagaaaccatattactgTTCAGAGTGTCGGCAGAGTTTTAGAAGGAGCGGAACACTCAAattacaccagcgcattcacactggagagaaaccgtatcactgttcagtgTGTGGGAAGACTTTTAATGTCAACTGTAATTTTCAAAAACACCAGCTGATTCACACAAGAGGGACTTGAATCACTGCTGAGACTGTGGAAACAGTttcagggtgttttcacaccagcactgtttagTTCAGTTAAAACAGACTGATTCCTTTGAACTCTTGGTGCAGTTAGtttcagcaggtgtgaaaacaataATCTCAATCAGgtacagaacaaaacaacagcacCCGCAAGAAGAAGTGGTCTGTTTCcggtcccaaacaaactccGAAGCAATTCACAAATTTTGTGCATTCAGTTTGAAGGTACTTCACACTGCAAAACTATACGCGCTGTTTtggaacacagaaccttcttgctgtatttactttcctgCTCTCACACCAGACAGCCCTGGCCAATCAGAAGAGACAGAGTGCTTGCATGGTTTGTTGGGGCACATTTTGGTACGTGTTGgttttgcctgtgtgaaaacaaaccaaaccaagtgaGAAAACACTCACAGTAAAACTGTCCCTTTAAATCTTGTATTCACAACAACTGTAGATCATCTGATGCTGGTTATGGTAACATGAAATATTTTCTCTAAGGaaagtaatttaatttcatttaacatACTGTCACCTTCctatttgtttacttttttttttccttttgcaaaataaacttttttttgcctAATGTATCCACACATGATGCTGCATGGCCACCtgtggtaaaatctaagaataACTTATGTCAAAATTGTGATTTAAGCCAATTTATTAtgcataaacaaaaataaaatgtgacttATTAGCTTCCTTCACTGAATTAGTTTTTATGATTTAGAGCTCGTCCCAAATTGATGAGATATttactataatataaagtttacttcttattaataaaggcCATAAATATTGTTTAGTTGTTTAGTCTTACTATCTGTCTTTTTAGTGAAATCAAAAATGATTGCTTTTTAAATGGggataaataaagctaaatggcTTAATATACAAACTACTAGTATGGgttattcttttaattaaaaagtaatatacaatttacatttacatttctatTCATTCATCTCCTACCTGTTTCTGGTAACT

Function

GO:

id name namespace
GO:0005871 kinesin complex cellular_component
GO:0005875 microtubule associated complex cellular_component
GO:0015630 microtubule cytoskeleton cellular_component

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210822 False 769 lncRNA 0.41 2 1105558 1106359
XM_007251581.3 True 2179 mRNA 0.39 2 1103450 1106792
XM_015606424.2 False 2159 mRNA 0.39 2 1103451 1106792

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 150970 927719 ~ 952480 (+)
sertad3 NA coding upstream 384745 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 390429 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 421547 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 539674 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 308615 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 460323 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 545862 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 556186 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 585806 1692598 ~ 1905714 (+)
G155457 NA non-coding upstream 68997 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 187210 914396 ~ 916240 (+)
G155357 NA non-coding upstream 286692 814753 ~ 816758 (+)
G155336 NA non-coding upstream 354294 748834 ~ 749156 (+)
G155332 LOC108443044 non-coding upstream 379264 720295 ~ 724186 (+)
G155455 NA non-coding downstream 1706 1108498 ~ 1113600 (+)
G155478 NA non-coding downstream 33182 1139974 ~ 1148922 (+)
G155483 NA non-coding downstream 42416 1149208 ~ 1236789 (+)
G155487 NA non-coding downstream 53717 1160509 ~ 1168023 (+)
G155484 NA non-coding downstream 121259 1228051 ~ 1239373 (+)
G155206 NA other upstream 950187 149347 ~ 153263 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 80354 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 96949 1203741 ~ 1223350 (+)
G155776 NA other downstream 1631569 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2504226 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2822539 3929331 ~ 3932163 (+)

Expression


Co-expression Network