G155478


Basic Information

Item Value
gene id G155478
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1139974 ~ 1148922 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210829
TGTATAATGAAGTGCTGCTCTATGAGGCTTATGAACTGCTGAGAGATGTAGAACACTGCTGCTCCAGAAGAAGCAGGTGAAGACAGGTCATCTTTCCTGTGTTTCTGACCCAGTTTTGACATTTTTTGGCCTGAAAATATGGTCTCAATATATAACATATGCTGTTGGCTGATGGGTCTGAGTGTTTACATTTTGATCTTGTGCACTGAAATAAAACATGACACTCCataaacatattataaataCTCACACAccataataatgcatattttaaacacagcaaAATGCAATCAACACAGGACACAGTATTCAGTAAACAAGAGTTCACCTTTATTAATACATCATTTCACATATAGAACCACGTTGGGTTTTGTCTTTTATCTAACAGAAACAGTGCTCTGGCTAAAGACCTTTAGCGCTGACCTGGGACCAGCAATACTGTCCTCTTTATAGAGTGTTTAAGATTTGTTTTAATCACAACTGCAATCATTTTCTATTATTTCCCAACCTCTCTTTAATGCTTAGAATTAAATAGACCGTgtctttaaaggggacatatatctcttttttacacaagttagaataggtctatgggatATACAAACaggttcatgaagttctttgcacaaaatcattCTTACATACATAGATATTAGCAGCTTTATTATGATagtttataatagttttagtccCTTTTAGGATCAACCATTTAgaggctctgtcacttttatgcaaataatctGTTTCCCAATGTTTACACTGAGCATTTACCACAAGTTAGctttagcttgtgctaaacggCAAATTACAAACAAGCAAGTTCATGCTTAACTATGCTAGAGGCACAAAACTTCTTATACTTCCCTCATTTGCTGACTTGCcttggacagtaggtacagatccctccctcagacaaagtctgctggctaattctgctgcATACTGTTTGAAGTTATAAACCAAAATGACAGAAATGgtgtggtgccagggtggttctatgcaggtttcttTAATGTAaagtcacaataagggagcatcCAAATGGCTTATAAAAGCATATGATTCATATGAGAGTTTCAGTCCCTTCAggatgagccgtttaagggctttgtcacttttatgcaaataagctggttctatgcaggtttttttaatgtgatgtCATAATAACAAGTTTTagataatatgtcccctttaaactATTGCACCACACACCATGATATGGGTCCTTGAATATGAGTCTATAGAGAAACTGTTCCCAGATCAGCTCTAAAACGCCAACCATCACCAACATCAACAACAGCACGAGGATGAGCGGGAGACACTGGAGAACAGGGTGAGAAGAGAACCGAGTTgttacagggagagagagacagagagagagagacagagagagagagagagagagagattccttTGTCAACCCCTAAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210829 True 1431 lncRNA 0.38 2 1139974 1148922

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 187494 927719 ~ 952480 (+)
sertad3 NA coding upstream 421269 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 426953 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 458071 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 576198 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 266485 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 418193 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 503732 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 514056 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 543676 1692598 ~ 1905714 (+)
G155455 NA non-coding upstream 26374 1108498 ~ 1113600 (+)
G155457 NA non-coding upstream 105521 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 223734 914396 ~ 916240 (+)
G155357 NA non-coding upstream 323216 814753 ~ 816758 (+)
G155336 NA non-coding upstream 390818 748834 ~ 749156 (+)
G155483 NA non-coding downstream 286 1149208 ~ 1236789 (+)
G155487 NA non-coding downstream 11587 1160509 ~ 1168023 (+)
G155484 NA non-coding downstream 79129 1228051 ~ 1239373 (+)
G155507 NA non-coding downstream 101062 1249984 ~ 1338723 (+)
G155514 NA non-coding downstream 113131 1262053 ~ 1263683 (+)
LOC103044527 NA other upstream 33182 1103450 ~ 1106792 (+)
G155206 NA other upstream 986711 149347 ~ 153263 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other downstream 38224 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other downstream 54819 1203741 ~ 1223350 (+)
G155776 NA other downstream 1589439 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2462096 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2780409 3929331 ~ 3932163 (+)

Expression


Co-expression Network