G155483


Basic Information

Item Value
gene id G155483
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1149208 ~ 1236789 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210834
aagaaaaaaacttttaaaggtgccTTCTTGACCTTCCTAGAACTGTAAAACATTAGAACTGACTCATTTGAATACTTGAAAAACTGACTTAGCAAACTTATCAATGGCTTTATAACTTTTTCTGTCAGTTACCTGCTTCGACATAGTGTAAATCAAGCGATCAACTGGCTTAACTATGCGACCCACACGTGACCTAACCTCATGTACAGAACTTGAACTAACAGTTTGTGTTGGAGGTTCACTAGTGCGTGCATGTACATGGTTTTCAGATGTGGCTAAATCAGATCTGGTGTCATCACTGAGCTGGTCTACATTTTCTGAGTGAAAAGTCTGTCCTGTGTGTGCCTGACTTGGGACTGGGGACTGTACAGTTTGTGGGGCTTCAACATTTTCAATGCTGCTCACATTATCCTCACTACAAGGCAAACTAGATACCCAGTCTTGAATTCTTGTGCACGTTTCTTCAGAAATGTCTGTTCTGGGCAGACTTTCATCCACGTCAGAGATGTCATGTGACACACTTGATTGGGATTCAGCAAAGGAGGCATCTGACACTGCATCCATGTCCAAGGGAAGAAAATTTGCAAGCATCAGCAAGTTACGATGAACAACTCTGTCCTGACCTGTTACAGGATTATGGATTCTGTATGTGTGAGTTGACTCGTTCACACCGACAACAGTGTAGACTGTGGACTCCCATCTGTCTGCAGTTTTTcgctttcctctctctctcttatttgcGACCAAAACTCTGTCACCAACTGTGATTTGTGAACCCTTCACACGACGGTTGTAGATCTGCTCTTGACGACGCTGTTCTTTGTCAGCATGTTGTTGAGCTACCAGCATTGCGTCTTTAAGGTCTTTTGTCAGAGACTTGACGTAAGGATCATAACTGCCAATCTCAGGGTCTTTCAAGATGTTTTTGAACATCAAATCAATGGGAAGGCGTGGAACCCTACCGAACATCAAGAAGAAAGGAGGGTAGCCTGTTGTCTCGTGCACTGTGCAGTTGTACATGAACGTCAAAGTTTGCAGCTGTTGTGGCCAATTTCTCTTAGCGTCAGGGGTAAGAGCGCGAATCATATTTCCCAAGGTTCTATTAAACCGTTCAACACTGCCATTACCCATTGGGTGGTAAGGAGTTGTGTGGGACTTTCTGACTCCAGCGATCTTAAGCAACTCACTGATCAACTGACTCTCAAATGAAGCTCCTTGGTCAGAATGAATTCTCTCTGGGAATCCATATATACAGAAATACTTGTCCCATAACTGCTTAGCTACCTGCTTTGCAGATTGGTCTTTACATGGAAATGAGTGCGATAACCTGGTAAAATGGTCTGTGACCACAAGTACATCAACAGACCTATTGTTGCGGTCTTCCGCACACCAGAAATCAATGCATACGATCTCAAGAGGTGACGTAGTTTTGATACTCTCTAACGGGGCTCTACCCTCAGGATCAGCAGATTTACCAATGACGCATCTAGGACAGTGTCTGACATATTCACGCACATCCCTGTCAATATGGGGCCAAAAGAATCTCTGACGAGCTATTGCTAAGGTCCTAAATTGCCCTTGATGCCCTGCACAGTCATGGACGCCTTTTAAGACTTCTTGTTTGAAAGAGTCAGGGACAATAAATTGGTGTCTTTTCTTCTTTGAGATTTGATCTTTGCATACTCGATACAGAATGCCACTGCAAGTGACCAATTTATCCCAGTGTTTTAAGTACCTTAGAACCATTAAAGACTCTCTGGCCTTTTCTCGTCTTGATGGTCTCCGTCCTCTGACCACATAGTTCAGCACTCTCGACAACACAGGATCTGTCATTTGGGCCTCACgcagctctctctctgaatAAGGGATGATATCAGCATCAGATGAAATCATCTGGGGTAAGTGATCCAACACGTCTGTAGCACGCACTCTAGCTCCAGAGTCCCATACACTGTGTGTCTCTAGAATAGCCGACACTTCCTCTCTAGAAAGAGAATGATTCTTGTGGCACACTGGTGCACACGTTTTCTGTCCCAAACTTGTGAAATGATCTGTAGGGCAGCTTGAACACCTGAAAGCATTCTGAACTGAATCGTTAGAGACAGGAACAGTTTCTCTAAGCAGTTCATCATAGGAGTCTTTCAAGATCCGCTTGCCGATGGTCTGTTTAACAAATGGCTTGCGACTGAGTGCATCTGCAACAATGTTTCTAGGGCCAGGAATGTACTTGATATCAAACTCATATGAAGCCAACTTTGCAACCCATCTCTGTTCACATGAATCAAGTTTAGGTTTGGTCATGATATGGGTAAGCGGGTTGTTGTCCGTCCACACTGTGAATACATGACCTTTCAACCAGTGGCTAAATTTGTCGCACACAGCCCACTTTAGCGCAAGAAACTCGAGACGATGTGCAGGATATTTCTTCTGAGCACGTGTGAGTGATTTGCTCGCAAAAGCAATGGGTCTGGCTCTACTTTGGCCTTCTTGAACTTGTGAGAGAACAGCACCTAAACCATCTAGCGAAGCGTCTGTGGACAGAATAAAGGGTCTAGTAAAATCAGGATGCGCTAACACGACACAGGTCAGCAAAGAGGACTTAAGTGCATCGAATGCTTGTTGATGAGCTGATGTCCAGTCACTTGGAGACAACTTTCGGTGCTGGGTGCGAACTTTTGCACAGGGTCTACCCCTACGCTTTTGCTTCTGGCCTGCTACCAACTCAAACAGAGGCTTTGCAGTGGCTGAATAACTTGGTATGAAGTGTTGATAGAAGTTAACCATGCCCAGAAATGATCTAATACGAGATGGAGAGGGAGTGACACCGTCTTGCTCCATTAAGTCTTTGGTGCACATCTGGCTGATAGCATCTACCTTGCTGGAGTCTGTAGACACTCCTGATTCATCCACAATATGGCCAAGAAACTTAACTGACCGCCTGAGGAACCAACACTTTTTAGGTGCTAACTTCAGGTTGTGCAAACGCAAGCGACTGAAAACTAGCTCTAAGCGTTCTAAAGCCAGTGCTTCTGTTGGTGCGTACACCAAAAGATCATCAAGGTAGCACAAGAGACTTAGGAAATTCTGGTCACCGAATATGCTCGTCATCATTCTCATGAAGCTGCCAGGACTATTAGAAAGACCTTGCGGAAGTCTGTTATATTCATATAGCCCTATCGGTGTCGTGAATGCAGAGTACTTTCGGTCATCCTCATGGAGAGGCATGTTGTAAAAACCAGATGTCAGATCCATTGTACTGAACAGTGCATTTCCTCCAAGAGCGGCCAGGCAATCAGCCTGATGAGGCAGTGGATGTGCATCTTTCAGTGTCCGCTTGTTTAGCCATCTGAAGTCAGTGCACACTCTTAAGTCGCCATTCTTTTTCCAGACAAGAACAAGTGGCGAGGCATACTCACTGGTAGACTTTCTGATTATTTCCCTCTCTTCCATCTCATCCAAGACACGTTTTAGCTTCTGATACTCAGCAGGAGGCACCCTGCGAAATGGTAGCCGAAATGGCTTGTCGTCAACAAGGTGGATTCTGTGGACAAACCCTTTGGCTTCACCACAGTCAAGATGATGACGAGAGAAAATGTCCTCATACTTGAGAACTAAGTCTGCTAGTTTGTCTTTCCATGTTTCAGAAACATCACACGACTCTAAATCAAGATCGCTCAGGCCCGCAAGCTTCAGTTTTTCTTTCACATCTGCTGTGTTACTCTCATGGGATCTGGAAATGTCAGAGCCTTTGGGAACATTCTGACCATGGCTAGTAATCTGGACTTTGCTACACAGTGATTCTGGACGTTTCATGTCTTCAAGAGCTAAACATGTGAAAACATCTGCAAGTTTGGCATTTCTCCTTATAGTAATAGGATTGGAAGATGCATTCAGCACTTTTAATGGGATCCATTTATCTCCCCATAAAGGTGTCACAACCCGGGCAACCATCAAACCTCTGGGAGCAGCACGTGAGGAGGTGGGTTCCACGATAACAGTACTGCCAGGCGATACTACAGTTTTTCCAGGTAGCTTAGCCCACAACAGATATTCAGTACCAGCATCTAAAGTGACAGCTGTGTTGCATTTTGCTGTACCAACTTTGTCAGGAGCGTCACCACTGGTCCAGCGACTAAGACCAGCAAGAAGAGACAAGAACTGCTCAGATTCATGACAGTCTGAGGTGGGAGTAGAAATCACCTTCCAGTAGTGACTGTTTTGTTTCAGATGACTAAGAACATGCTTAATAACATTAGTGCCAATAATTAGATCATCTGATTGATTTTGGACTACAAGAGCAGGAACAGAAATATTGCAGCCATAAATCTCCATGGTGAGCTCTATTGTAGACTTTGGCTTCACACGGCTACCTCCACATCCAATGAGTATTACATCAGTGTCTGACCGACTTGTTTCAGTCACGGCTCCAGCTTCAACAAGCTTCAGTTCTGCTGCTTCACTGAGCGTACACGCCATGGATCCGCTGTCTAGCATAGCTTTGAGTGGCACTTTGTTTTCGACCATTACTGAAGTATAAAACAGACTGTCACTGCTCCTAATCTTTTGTGTGTTCTGAAAAACAGTTTGTTCTGATCCATCTTGAGCATCAAATTCATATTGGGAGTGTTCCATCTGACCTGGGCATCCTCCCTCCATACACAGGTCTGTTAGTTTTCCTGCACATTGCTCTGCTGGGACAGTTTGGCTGTACATGAGCTTTTAGTGTGGCCTGGAGAGAAACAGCGAAAACATAACTTCGCTGAGAAACAGTGCGATTTAGTACTATGACCGTTCTCACCGCACACGCTGCAAGTTGTGATGTTGCGCCAGCTCCTTCTTCTACCCTCATGATGGTTAGATGTCACTGCATTCTTTTTCTGGACTTTTTCCAAGACCTGTTCAAGCATTGTCATCATGCGACTTAACATGGCATCACTCTGACTGGCATGTTGTTGGGACATCACAATTGTTTCGCTAGTGTTAGGGACATTATTGCTGCATTTGGACACTGTCTGTCCATTTACAGTCACATCACTGTCTTTCACATGAGCAGCAGTTGCATTGTGTCGTAAATGTACAGCACCTGATGCACTAGTCATAGATCTCTTTTCACGCTGGTATTCATCAATTCTTTCTTGAATCTGTTTTGCACTCCACTCGTGAATCGGCTTGCATTTGAACACATAAGCTAACTCAGGGTCTGGACAGTGCTTAACAAACATTCTGGTTACCTCCTCTGTCATGTTTTCCATGTGTCTGCCTTGACGACGAAGGCCCTCATCAGCGAGGTCTGCTGCTTTGTTGACACGTATCCAGTAATCAACAGGATTTTCTTTGTGTCTTGGAAGTGTAGAATAAAAGTCTGCAAGTGGCAGGCATGACGATGTCTTACTAAAATACTGCAGCAGTATGTTGTAGATTGCATCTGGATTTTCTCTGGCATTAAGTGTGGGATCGCTTCTCAAGCCTATTCGAACTACATCTCTAGCCCTACCCATCAACCTACAGAGTACTTCATCTGACTGTTCAGCTATTGTGTAATTCTGTTTTCTGACATAGGACTTCATCATGTCAATCCACTCTGTAACTGAGCATTTGTCTGAATCATCACCCCGGAAAATGACTGGTTCCCTATTAGGACTGACACTCACATTTATAAATGGCGTTTCACCACCACTAGGTCTGTCTTGCTGTACAGTGCATTGGTTCGTATTGCAATTTACTGAACCCTGTGAAGCTAGTTTTTCAATGATAGCATCACCAATCTGTGAACCCATTTGACTAATCATTTCACTCAGCTGTTGTACTGGATTTACATGAGCAAAAGGTGTAGAGTGACTTGGCCCACCCTGTGCAAACTGCCCCACAGTAGATTCAACTGAATCCTGACCCAACCCTGAATCACCATTACTCTCAGTTAGCACAGAAGTACCtaaatatttctcattaaatttaGGTGTCACAGGCACAGACATAAAACCTCTACCCCTTCCAAAACTCAAATTGTGATCCATATCAACAGAATACATAGACTTACTTGCAATTTTAGCTCTGAATTCAGTAAACGTTAAAACTTACACAAATcaggtgaaagagagaaaaaaacaaaaaaaaatgcacacttTAATAACGATTCAG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210834 True 6138 lncRNA 0.44 2 1149208 1236789

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 196728 927719 ~ 952480 (+)
sertad3 NA coding upstream 430503 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 436187 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 467305 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 585432 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 178618 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 330326 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 415865 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 426189 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 455809 1692598 ~ 1905714 (+)
G155478 NA non-coding upstream 286 1139974 ~ 1148922 (+)
G155455 NA non-coding upstream 35608 1108498 ~ 1113600 (+)
G155457 NA non-coding upstream 114755 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 232968 914396 ~ 916240 (+)
G155357 NA non-coding upstream 332450 814753 ~ 816758 (+)
G155507 NA non-coding downstream 13195 1249984 ~ 1338723 (+)
G155514 NA non-coding downstream 25264 1262053 ~ 1263683 (+)
G155490 NA non-coding downstream 60506 1297295 ~ 1346004 (+)
G155573 polr2i,rpb9 non-coding downstream 121161 1357950 ~ 1361894 (+)
G155579 NA non-coding downstream 128211 1365000 ~ 1371912 (+)
LOC103044527 NA other upstream 42416 1103450 ~ 1106792 (+)
G155206 NA other upstream 995945 149347 ~ 153263 (+)
G155776 NA other downstream 1501572 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2374229 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2692542 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3338879 4575668 ~ 4637290 (+)
G156188 NA other downstream 3920365 5157154 ~ 5157400 (+)

Expression


Co-expression Network