G155490


Basic Information

Item Value
gene id G155490
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1297295 ~ 1346004 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210847
agagagagagagagatattggtTTTCAATCCATATCCACTATTCctagtatttgcttatttaggagtattttatcctcttaaGTAACTAAGATGCTGTAAAGTATCATTAAAAAATTGTCTTGCAATATATCAAGTATCGTAGGATGacagtatcatgatatcatcGTTCTTGtgcattgttttaatactgtatactgagattccctgtgattcccaccacTAGTCACTGCCAAGTCCAGATATCTAACCTGCTGGATATTTGTCTGGGGCTTACGAGGCATCAGCAATCACTTGGCAAACTCTTCTTCGCATAGCGATTAAACAAGCGCTGAACAATTTTAAGCCTTTGTCGGCTGTAAAAAGAGGCctaaaattgtgtagtgtgaacccaATCTTTCATTAAAGACGAAGGAGCTGAAACAACAAGCTCATGTAGCTGTTGTGTAGCCTCACTAGCTAACACTGCCCAACAGTAAAGTAAAGTCTTACAAGTCTAACATGTCTCTCTTTAAAGGAACAGTTTGGCCCAAAAAGCTAACACAAAACGCTAATAATGAACACAAGTCAAGGGCCACCAATGAACATGCAAATTTTACCATGCTAACTGATGCCCAGTGACTTCTATCAGTTATTAGCCACATGGTAGCATGGTTGCGTGTAGAGGACTGTAGCGCCTGTCCTTCTCCGGCCCCCTGCAGGCTGCCAGTGCGATAGCCGGTGAATGAATTGGCTCACACTTTCTCACACTGTCACACACGTACTTACACACATTACAGTATCCGGACAATTATTAGAGGTGGTGTTGGTATTTTTGAGGTTCTAGATGAACTCCAGAtttgctctcttttttcctcacaTGGAGAAACACAGCTCattattggtgtgtgtgtgtgtgtgtgtgtttgtgtgagaggtgtgtatgtgtgtgtgtgtgag
>TU210848
agagagagagagagatattggtTTTCAATCCATATCCACTATTCctagtatttgcttatttaggagtattttatcctcttaaGTAACTAAGATGCTGTAAAGTATCATTAAAAAATTGTCTTGCAATATATCAAGTATCGTAGGATGacagtatcatgatatcatcGTTCTTGtgcattgttttaatactgtatactgagattccctgtgattcccaccacTAGTCACTGCCAAGTCCAGATATCTAACCTGCTGGATATTTGTCTGGGGCTTACGAGGCATCAGCAATCACTTGGCAAACTCTTCTTCGCATAGCGATTAAACAAGCGCTGAACAATTTTAAGCCTTTGTCGGCTGTAAAAAGAGGCctaaaattgtgtagtgtgaacccaATCTTTCATTAAAGACGAAGGAGCTGAAACAACAAGCTCATGTAGCTGTTGTGTAGCCTCACTAGCTAACACTGCCCAACAGTAAAGTAAAGTCTTACAAGTCTAACATGTCTCTCTTTAAAGGAACAGTTTGGCCCAAAAAGCTAACACAAAACGCTAATAATGAACACAAGTCAAGGGCCACCAATGAACATGCAAATTTTACCATGCTAACTGATGCCCAGTGACTTCTATCAGTTATTAGCCACATGGTAGCATGGTTGCGTGTAGAGGACTGTAGCGCCTGTCCTTCTCCGGCCCCCTGCAGGCTGCCAGTGCGATAGCCGGTGAATGAATTGGCTCACACTTTCTCACACTGTCACACACGTACTTACACACATTACAGTATCCGGACAATTATTAGAGGTGGTGTTGGTATTTTTGAGGTTCTAGATGAACTCCAGAtttgctctcttttttcctcacaTGGAGAAACACAGCTCattattggtgtgtgtgtgtgtatgtgtgtgtgtgtgag

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210847 True 937 lncRNA 0.41 2 1297295 1346004
TU210848 False 912 lncRNA 0.41 2 1297295 1346004

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 344815 927719 ~ 952480 (+)
sertad3 NA coding upstream 578590 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 584274 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 615392 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 733519 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 69403 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 221111 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 306650 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 316974 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 346594 1692598 ~ 1905714 (+)
G155514 NA non-coding upstream 33612 1262053 ~ 1263683 (+)
G155484 NA non-coding upstream 57922 1228051 ~ 1239373 (+)
G155483 NA non-coding upstream 60506 1149208 ~ 1236789 (+)
G155487 NA non-coding upstream 129272 1160509 ~ 1168023 (+)
G155478 NA non-coding upstream 148373 1139974 ~ 1148922 (+)
G155573 polr2i,rpb9 non-coding downstream 11946 1357950 ~ 1361894 (+)
G155579 NA non-coding downstream 18996 1365000 ~ 1371912 (+)
LOC111194749 NA non-coding downstream 33723 1379727 ~ 1383644 (+)
G155581 NA non-coding downstream 35832 1381836 ~ 1382137 (+)
G155576 NA non-coding downstream 124137 1470141 ~ 1471422 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 19033 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 73945 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 190503 1103450 ~ 1106792 (+)
G155206 NA other upstream 1144032 149347 ~ 153263 (+)
G155776 NA other downstream 1392357 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2265014 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2583327 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3229664 4575668 ~ 4637290 (+)
G156188 NA other downstream 3811150 5157154 ~ 5157400 (+)

Expression


Co-expression Network