LOC103036073 (LOC106581333,LOC102227031,LOC105940324)


Basic Information

Item Value
gene id LOC103036073
gene name LOC106581333,LOC102227031,LOC105940324
gene type misc
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1203741 ~ 1223350 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210867
CTGATTCACAGCTCCAGTAGAAGACATCTGTCTAACATTACCAGTTCATGTTATTGTGTTCTTACGGAAAGTTGAATTTTATGTTTTGGGTGACCCTTGTTCTCCTTTGAAGATAGATCTGTTCACCGCAGCGTGGTGTGGTAGGGTGGAGGGGGGCCTATGGTTAGAGTGAGATCTGGTGGAGCAGAAGACAGTGATAGCGGGCAGAGATGGAGGATCGAGGGCACTGGGCCAGTAAAACTGAGTTTCTTCTGGCGGTGGCAGGGAACGTGGTGGGTCTAGGAAATGTGTGGAGGTTCCCGTACCTGTGCTACAAGAATGGAGGAGGGACGTTCCTGGTGCCGTATCTGGTGTTTATGGTGACTTGTGGGGTGCCCCTTTTCCTCCTGGAGACAGCTATGGGGCAATACACTCAGGAGGGGGGCATTACATGCTGGCAGCGCCTCTGCCCTCTGGCTGATGGTGTTGGCTATGCAGGGCAGCTGATTTTGATCTACAGCTGCATGTGCTACATCATTGTTCTGGCCTGGGCACTGTTCTATCTGGTGTTCTCCTTCAGCTCCCAGCTGCCCTGGGCCACCTGCGACAACAGCTGGAACACAGAGTGGTGTACTTTTGGAGTAAGGAACCTTACACTCAACTGGACTGGACAAACCAACTCAACATCAGCGGCCACAGAGTTCTGGGAGCGCAGAGTTCTGGACATCTCTGGAGGAATTGAGGAGCTGGGTGAACTGAAATGGGAGGTCGTCCTCTGTCTGATCACCATGTGGATCATCTGCTACTTCTGCATCTGGAAGGGTGTCAAATCCACCGGCAAGGTG
>TU210873
gttctctctgactctggctgctgatgacaGGCAGCATGGATCCAGGATTTAAACCAGACCTCTTTGATGTATTTCTTATCCACAGGAGCTGAGAGAATGAGTGATGTCATTAAGGACATGACAGGATGGCAGCCTAACTTCATCTTTAAACTCTGCTGGAAGTACCTTACCCCCCTTGTTTCTATGGTGTCCTTTATCTGCTCTCTGGTGGAGTACCAGCCCCTGACTTTTAACCGctggtat
>XM_022679957.1
TGTACAACTCATCTGAAATCAGCATTTTTCACCAGGCCCGGTGTAACAATTCGTACTTGCCCACAGCGTGGTGTGGTAGGGTGGAGGGGGGCCTATGGTTAGAGTGAGATCTGGTGGAGCAGAAGACAGTGATAGCGGGCAGAGATGGAGGATCGAGGGCACTGGGCCAGTAAAACTGAGTTTCTTCTGGCGGTGGCAGGGAACGTGGTGGGTCTAGGAAATGTGTGGAGGTTCCCGTACCTGTGCTACAAGAATGGAGGAGGGACGTTCCTGGTGCCGTATCTGGTGTTTATGGTGACTTGTGGGGTGCCCCTTTTCCTCCTGGAGACAGCTATGGGGCAATACACTCAGGAGGGGGGCATTACATGCTGGCAGCGCCTCTGCCCTCTGGCTGATGGTGTTGGCTATGCAGGGCAGCTGATTTTGATCTACAGCTGCATGTGCTACATCATTGTTCTGGCCTGGGCACTGTTCTATCTGGTGTTCTCCTTCAGCTCCCAGCTGCCCTGGGCCACCTGCGACAACAGCTGGAACACAGAGTGGTGTACTTTTGGAGTAAGGAACCTTACACTCAACTGGACTGGACAAACCAACTCAACATCAGCGGCCACAGAGTTCTGGGAGCGCAGAGTTCTGGACATCTCTGGAGGAATTGAGGAGCTGGGTGAACTGAAATGGGAGGTCGTCCTCTGTCTGATCACCATGTGGATCATCTGCTACTTCTGCATCTGGAAGGGTGTCAAATCCACCGGCAAGGTGTGTacacacacaccaacacatacacacacaccactggtGTACACCTGTTGCTCAAACCTGCTCATCTTCACCCCTCAGTTTGTTGCCATGGAGGTGGTAATCACTTCAGTGACTGACGTGTTCCCTGGAGTGCTGCGCCGAGCTGGACGCCGAGAATTTTTCGTTCTCTTCTACTGCCTTATCTGCTTCTTCAGTCAGCTAGTGATgGCAGCATGGATCCAGGATTTAAACCAGACCTCTTTGATGTATTTCTTATCCACAGGAGCTGAGAGAATGAGTGATGTCATTAAGGACATGACAGGATGGCAGCCTAACTTCATCTTTAAACTCTGCTGGAAGTACCTTACCCCCCTTGTTTCTATGGTGTCCTTTATCTGCTCTCTGGTGGAGTACCAGCCCCTGACTTTTAACCGctggtatttggataccagatatatataa

Function

NR:

description
PREDICTED: sodium- and chloride-dependent GABA transporter 2-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210867 False 824 TUCP 0.52 6 1203741 1214663
TU210873 False 243 lncRNA 0.47 2 1222746 1223329
XM_022679957.1 True 1200 mRNA 0.51 8 1203903 1223350

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 251261 927719 ~ 952480 (+)
sertad3 NA coding upstream 485036 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 490720 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 521838 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 639965 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 192057 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 343765 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 429304 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 439628 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 469248 1692598 ~ 1905714 (+)
G155487 NA non-coding upstream 35718 1160509 ~ 1168023 (+)
G155478 NA non-coding upstream 54819 1139974 ~ 1148922 (+)
G155455 NA non-coding upstream 90141 1108498 ~ 1113600 (+)
G155457 NA non-coding upstream 169288 1015242 ~ 1034453 (+)
G155436 NA non-coding upstream 287501 914396 ~ 916240 (+)
G155484 NA non-coding downstream 4701 1228051 ~ 1239373 (+)
G155507 NA non-coding downstream 26634 1249984 ~ 1338723 (+)
G155514 NA non-coding downstream 38703 1262053 ~ 1263683 (+)
G155490 NA non-coding downstream 73945 1297295 ~ 1346004 (+)
G155573 polr2i,rpb9 non-coding downstream 134600 1357950 ~ 1361894 (+)
LOC103044527 NA other upstream 96949 1103450 ~ 1106792 (+)
G155206 NA other upstream 1050478 149347 ~ 153263 (+)
G155776 NA other downstream 1515011 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2387668 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2705981 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3352318 4575668 ~ 4637290 (+)
G156188 NA other downstream 3933804 5157154 ~ 5157400 (+)

Expression


Co-expression Network