G155507


Basic Information

Item Value
gene id G155507
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1249984 ~ 1338723 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210876
cttagcaaaaacaatagggttctacgcaccttcggtgcttgaaccctaaaaaacccactaaatttaaggtgtgtctaaactctTAATTGGTACTGTATGCGTGTGTGGGGTTTTGACCTGAGTATCCTGAATCTTTCTCAGAACTGCAGCGGGACTCCCGCCCATTCGCCTCCTGTTGCATGCGCACTCGCGCTCTGGAGGCCAGCAGAGCGGCGCTGTTGCTCTTGTCCTTGGCGTTCTTGCTGGCAGGGCGACTGGGGCGCTCTCCGATACAACCTGAGTCCAGCGGCATCTTGGGCACTGCAGGCACACAAGGGGAGCTGGGCAGATCCAGAGCTAATCTATGATCCACAATCTATAAGCAATAATCGATATTTTCAACCAATCAGTGCCAGATAACAGCACAGGTCTTCAGGTGTTCAGGTTCCACAAGCATTGTTTGTGTTAcgtatttaaagcatattttactGCCCTGGTGCAGCATCCTGTAGTACTGTCCCATTGTAACTGAAAGTAATTTACAATGCTGGACACAGTGATCTAcaattatagtaaaaaaaaatcggtACCactaatatcattaataatcagtataataaaccctttataaaggtagttttattttaaagtggtacctaaaaATCCAATGAATGTAGTTTACTACAGGACATCACCAAGGCATTGTATATATGTTTACTACAGAACACCATATCAGCCTTATTGattactacaggacactacaccagCCTTGGAGATTATTGTGTTTACTACTTTAGCCTTAAAGATCACATTATTTTACAACAGAACCCTACAGAAGTTTACATTGTCatgtggatttgattgcatttggcAACACAagcgttagtgaggtcaggatgttggatcaCCCCATTTTATCCACTTTAACGTACAGGATGGAGCACCCTTATCTATCAGCATCATACCTCTAAACCAGCCCAGCCCGCAATTCGATGGACAAGTCAGTTGGGCAATTAACAAGAGAATGGTACTGGTCTGACTGCATTgggccaagtgtaaagtttggtggaggggggattttTTTTAGGAGTTGGGCTCGGTCCAAACTCTTAATGCTTCAGTATGAACAGTTTAGACATGGCCCCTTACTTTTCTAACATGACTGCACACTAGTGCACAAAGCAAGGTCCATAAAGACATGGAACTTGACCTCAACCAGAAAGAACACAGAAATCTCTGGCGTGCAAACAACCGTACTCTTTATAAGAGCTGCACTTTACTACAAAATGTACTTAACAATTGTTGAACGGAACACCAATAttaactaatatatttattagttatatttaaatatatttattggagaattttattattatattgagaaatatattctttatataaTATACGCTCCAAAATGCTCTATATAATAATTGTGTGATAATATAAGCTAAAGATGTTATAATAAACTATCATTCTCTTTATGGTTAGGagaacaataatattaataaacacttcttttttaaaaaagttgttattctttttaaatatctgcacaaaataaatggaATCTTTGAAAAAACAACAGTCATCTGGATGATAAATAATTGTTCTTTCACAAATGTATTATTAGTCATTTATAGCACGATTAAAAATAGGCAACAAGCCTGCCAGACGGTTCTGAGCAGCATTGGGTAAATCAGCTCTGGATAATAAGGATAATAAACATTACAGTTATAGTAATGTATACAGTTATAGTATTTTGAGCACACATCTTCAACACTGTCTTGAAAAAACATGGTCGTGTCATTATCATTATTGAAAACGGCTGAAAGACACCTTTTTCATAAGACACCTCCAAAAGACACCTccaaagacctcaaataaactGGGGGCCTGGTTTGACTTCACATAATATGCTTCTGGAAGAATGGTCTAAAATTCCTATAAACACAATCCTAAACCTTGAGTAAAGCCTTCCAGAAAAAGAGTTGAAGCTGTGAGAGATGCAACAGGTGGGCTAACCTCATATTAAACCCTATGAGATAAGAATGGGATGTCACTCaaattcttatttaatgttcGTGCAAAGGCAGAAGAGCGAATACTGTTGGTGATATCTTGTAGAAATTAGATGTCTGATGCTGcattaatgtaaaaaacaaaatcagataTTGCATCTTTAACACTGTTCATGCCTGATGGATTAGTAGGAATGAtataacagcacacacacacatattactaAAAGAATTAAATGAGTGCTTATTTCTCCAATCTAATAATACTTAAGCTGACAGTGCTTAGGTCTGCTACATTCACCTCTTGAGCAAGTCTGAGCAGCTGTCCgcgtgtgtgtgaatgtgtgtgtgtgtatattccCTTCCCCCTGCTCTATTATGTAATACTATAACTTGGCACAGAGCGAGACAACCGGCTCACACGCGCACGCACGCGCGCGCTCACACCCTATCCAAACACATAACTGTCTTTAGCTTTTAGCACTAaagctacaacacacacacacacacacacacacacacacacacacact

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210876 True 2533 lncRNA 0.39 2 1249984 1338723

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 297504 927719 ~ 952480 (+)
sertad3 NA coding upstream 531279 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 536963 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 568081 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 686208 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 76684 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 228392 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 313931 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 324255 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 353875 1692598 ~ 1905714 (+)
G155484 NA non-coding upstream 10611 1228051 ~ 1239373 (+)
G155483 NA non-coding upstream 13195 1149208 ~ 1236789 (+)
G155487 NA non-coding upstream 81961 1160509 ~ 1168023 (+)
G155478 NA non-coding upstream 101062 1139974 ~ 1148922 (+)
G155455 NA non-coding upstream 136384 1108498 ~ 1113600 (+)
G155573 polr2i,rpb9 non-coding downstream 19227 1357950 ~ 1361894 (+)
G155579 NA non-coding downstream 26277 1365000 ~ 1371912 (+)
LOC111194749 NA non-coding downstream 41004 1379727 ~ 1383644 (+)
G155581 NA non-coding downstream 43113 1381836 ~ 1382137 (+)
G155576 NA non-coding downstream 131418 1470141 ~ 1471422 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 26634 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 143192 1103450 ~ 1106792 (+)
G155206 NA other upstream 1096721 149347 ~ 153263 (+)
G155776 NA other downstream 1399638 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2272295 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2590608 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3236945 4575668 ~ 4637290 (+)
G156188 NA other downstream 3818431 5157154 ~ 5157400 (+)

Expression


Co-expression Network