G155576


Basic Information

Item Value
gene id G155576
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1470141 ~ 1471422 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU210993
AGagattttattgtaaattatttctgaataagaagaaaataagaaatatgtGAGTTTTGTTAAGAAATTCATCatataaaaagtttaaataacaaacagaaacagaaacgtTAGCAATGCGGATTAGCAATGTGGATTAGCACGAGTTTCTGCTAAAACCTGTTCCCAGGATCGGCTGTAAAACGTCACCGAGTGGAATGTCTTCATTCAGGTCTCCTCTGCGGCTCTCCAACCAGACCCGAGTCCCTTTACACCACAtcaaagctaatgctaatgctaatctcaTTATCCTCATTCGTTCGAAATGGTAAGAGCTGAATTTAGAACAGCAGAACCCCCTGCTCTAGCACTGGGGATCTAAAAAGGCCACTGCATGATTTCACATGCgcttcacttaaaaaaaaacgggAGGTTAATAACAAACAGAGACAGGTCATAAAAGACCATAACGTGAAATAACAGGTCATGACAGGCCATAACGTTTCATAACAGGTTATGAGAGGCCATAACAAGCCATAACGCATCATAACAGGTCATGATCAGTAATTACAGGTCATAATGGGTCATAACAGGTCAAAAAGGTCATGACAAGTCATACCATAACAGGTTACGACAGGTCATAACTAGTCATAATGTGATAACAGGGCATAACGTTTCATAACAGGTCATGACAGATCATGACCGGTAATTACAGGTCATAATGCGTCATAACAGGTCAAAAAGTTAATGACAGGTCATACCATAACAGGTTATGACAGGCCATAACTAGTCATAATATGATAACAGGCCATAACACATCAAAACAGGTCATGACAGATCATGACAGGTAATTACAGGTCATAATGCATCATAACAGTCAAAAGAGGTCATGACAGGTCATCCCATAACAGGTTATAACAGGTCATAACAAGCCATTAAATAATAACAGGTCATAAAACGCCATAAGACATCATAACAGGTCATGACAGATCATGACA
>TU210996
AGagattttattgtaaattatttctgaataagaagaaaataagaaatatgtGAGTTTTGTTAAGAAATTCATCatataaaaagtttaaataacaaacagaaacagaaacgtTAGCAATGCGGATTAGCAATGTGGATTAGCACGAGTTTCTGCTAAAACCTGTTCCCAGGATCGGCTGTAAAACGTCACCGAGTGGAATGTCTTCATTCAGGTCTCCTCTGCGGCTCTCCAACCAGACCCGAGTCCCTTTACACCACAtcaaagctaatgctaatgctaatctcaTTATCCTCATTCGTTCGAAATGGTAAGAGCTGAATTTAGAACAGCAGAACCCCCTGCTCTAGCACTGGGGATCTAAAAAGGCCACTGCATGATTTCACATGCgcttcacttaaaaaaaaacgggAGGTTAATAACAAACAGAGACAGGTCATAAAAGACCATAACGTGAAATAACAGGTCATGACAGGCCATAACGTTTCATAACAGGTTATGAGAGGCCATAACAAGCCATAACGCATCATAACAGGTCATGATCAGTAATTACAGGTCATAATGGGTCATAACAGGTCAAAAAGGTCATGACAAGTCATACCATAACAGGTTACGACAGGTCATAACTAGTCATAATGTGATAACAGGGCATAACGTTTCATAACAGGTCATGACAGATCATGACCGGTAATTACAGGTCATAATGCGTCATAACAGGTCAAAAAGTTAATGACAGGTCATACCATAACAGGTTATGACAGGCCATAACTAGTCATAATATGATAACAGGCCATAACACATCAAAACAGGTCATGACAGATCATGACAGGTAATTACAGGTCATAATGCATCATAACAGTCAAAAGAGGTCATGACAGGTCATCCCATAACAGGTTATAACAGGTCATAACAAGCCATTAAATAATAACAGGTCATAAAACGCCATAAGACATCATAACAGGTCATGACAGATCATGACA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU210993 True 977 lncRNA 0.38 2 1470141 1471422
TU210996 False 977 lncRNA 0.38 2 1470141 1471422

Neighbor

gene id symbol gene type direction distance location
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 12615 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 517661 927719 ~ 952480 (+)
sertad3 NA coding upstream 751436 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 757120 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 788238 678995 ~ 681903 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 95693 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 181232 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 191556 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 221176 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 1200081 2671503 ~ 2720959 (+)
LOC111194749 NA non-coding upstream 86497 1379727 ~ 1383644 (+)
G155581 NA non-coding upstream 88004 1381836 ~ 1382137 (+)
G155579 NA non-coding upstream 98229 1365000 ~ 1371912 (+)
G155573 polr2i,rpb9 non-coding upstream 108247 1357950 ~ 1361894 (+)
G155490 NA non-coding upstream 124137 1297295 ~ 1346004 (+)
G155669 NA non-coding downstream 125682 1597104 ~ 1597615 (+)
G155677 NA non-coding downstream 160443 1631865 ~ 1648626 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding downstream 172537 1643959 ~ 1650935 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 207123 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 291985 1763407 ~ 1765707 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 191879 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 246791 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 363349 1103450 ~ 1106792 (+)
G155206 NA other upstream 1316878 149347 ~ 153263 (+)
G155776 NA other downstream 1266939 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2139596 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2457909 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3104246 4575668 ~ 4637290 (+)
G156188 NA other downstream 3685732 5157154 ~ 5157400 (+)

Expression


Co-expression Network