G155579


Basic Information

Item Value
gene id G155579
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1365000 ~ 1371912 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211000
cGAAACGGGCGGAAAATAAAACGTgcggaaaacaaaacaaacccgAAAACGGGCGGACAAACACAAAATGGCGCCGAGCGCGAGtgagggagaaacagaggaTCGCCTGGGAAGCGAGGCTGCCCCTTATTTTCGGGGAGGTAAAAGGAACAACTTCCCAACTAAAACAAAAGGTAGGACTCTTGGTGCTTGTGGGTGAACTGCGGTTTCGCCAGGGGGGGAGGAAGGGGGAACCGCGGGGAGCCAAACAAAGAGAGTCAGCGCGCTGccgctgc

Function

GO:

id name namespace
GO:0006030 chitin metabolic process biological_process
GO:0006032 chitin catabolic process biological_process
GO:0006040 amino sugar metabolic process biological_process
GO:0042737 drug catabolic process biological_process
GO:0009056 catabolic process biological_process
GO:1901565 organonitrogen compound catabolic process biological_process
GO:0009057 macromolecule catabolic process biological_process
GO:1901575 organic substance catabolic process biological_process
GO:0046348 amino sugar catabolic process biological_process
GO:1901071 glucosamine-containing compound metabolic process biological_process
GO:1901072 glucosamine-containing compound catabolic process biological_process
GO:0017144 drug metabolic process biological_process
GO:0044248 cellular catabolic process biological_process
GO:1901135 carbohydrate derivative metabolic process biological_process
GO:1901136 carbohydrate derivative catabolic process biological_process
GO:0006022 aminoglycan metabolic process biological_process
GO:0006026 aminoglycan catabolic process biological_process

KEGG:

id description
ko00520 Amino sugar and nucleotide sugar metabolism

RNA

RNA id representative length rna type GC content exon number start site end site
TU211000 True 275 lncRNA 0.56 2 1365000 1371912

Neighbor

gene id symbol gene type direction distance location
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 412520 927719 ~ 952480 (+)
sertad3 NA coding upstream 646295 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 651979 704355 ~ 713021 (+)
LOC103034482 NA coding upstream 683097 678995 ~ 681903 (+)
LOC103040340 LOC108410554,LOC107566291 coding upstream 801224 551929 ~ 563776 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding downstream 43495 1415407 ~ 1457526 (+)
trip12 trip12,LOC107679016,LOC107710892 coding downstream 195203 1567115 ~ 1622172 (+)
LOC103036673 NA coding downstream 280742 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 291066 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 320686 1692598 ~ 1905714 (+)
G155573 polr2i,rpb9 non-coding upstream 3106 1357950 ~ 1361894 (+)
G155490 NA non-coding upstream 18996 1297295 ~ 1346004 (+)
G155507 NA non-coding upstream 26277 1249984 ~ 1338723 (+)
G155514 NA non-coding upstream 101317 1262053 ~ 1263683 (+)
G155484 NA non-coding upstream 125627 1228051 ~ 1239373 (+)
LOC111194749 NA non-coding downstream 7815 1379727 ~ 1383644 (+)
G155581 NA non-coding downstream 9924 1381836 ~ 1382137 (+)
G155576 NA non-coding downstream 98229 1470141 ~ 1471422 (+)
G155669 NA non-coding downstream 225192 1597104 ~ 1597615 (+)
G155677 NA non-coding downstream 259953 1631865 ~ 1648626 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 86738 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 141650 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 258208 1103450 ~ 1106792 (+)
G155206 NA other upstream 1211737 149347 ~ 153263 (+)
G155776 NA other downstream 1366449 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 2239106 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2557419 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 3203756 4575668 ~ 4637290 (+)
G156188 NA other downstream 3785242 5157154 ~ 5157400 (+)

Expression


Co-expression Network