G155677


Basic Information

Item Value
gene id G155677
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1631865 ~ 1648626 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211133
ATACATGTACAGAAAAGGTAGGCAAGTAGAACACAGCAGTGCAGACACGGTTCATTTTCACTTCCTACTCCATAATCATACTATTCTACATTAAATATCATGAGAAAAGTGACTTGTTAATTGGTGATTTcactgaaaaagaaagaaatgattaAAACTGACTAAACCAGGGGTTCTTAACCTCATAACAAGGGGGTCCTGACATATTTCAGGGGGGGTTGTGAGAATAAAGCTAATTAAGGGTGTTTAGGGAGAATCGGCTCCAGATTTGGAGCTGTCCTTTACTTGAATAAGACTGACTGATTCGCCATTCTACTAGACTCTTTGACTCTTTAAATTGATTCAGATTCACTTGTGCGTGTTGTGTGTCTGCACATGTTTCCAGGTTTGCTAAAAATGGAGTGCTTTTTACTGTAAGCGAGAAtacaaacacaatacaatacaatataacacAATTCCACACAAATGACACACCAGTGTCCAGGCATGTGGACTCGAGTCACATGACTTAGATCGCATACCAAGatttatgcattaATATGCAGACAAAATGCAGATAAAACGAGCTTCTTTGCGGTAGAGATTCTGGCTTATACAGTACCCATGAACTGCATATCTAATTTCCCTGGTATAAACTCCGAGGTTATTACTTTTTtcgttaaaaaaaatttaatattacaATTTGTAACTTGACTTAGACAAGGTTAAAGACTAGGAACTTGCCTTGAGACGTGTCCgtattgacttgggacttgacttgttATTTCTAACTTGGTGACTTCTTCCTAGGTTTGCCTGCATCACATGacataggctacgttcacacagcaggtaaatgtgCACTCACACTAGGCACGAATTTGCCCCCTCCCCCACTTGCCTGCACTCaacactgcttttaaacaatccgtgcccgagcacacTTACGCCATCACTCACTGCTCAGTGGTCTTGTCGGTGTagtgctgaattcagcatccccaccatgaaaagcaccctctctcggaagcgcgtcttcttgataaaaaaaCTGAGATAATACGCTTTAACTAACTTAGAAATATGAGCCAAAAGTCACAGTTACATGCATAGCAACACAGCACATGCTCctaagagggggtgcttttcctggtgggggtgctgattttggcacaacaccgccaTGTTCGTTTACAGGAATGTCGCATAACCCTTAATAAGCAAACTCATATAATTAATATTCTCTTATGTTTTAGAAAGCAGTACTGTcaatcatttcatttttttgtgggAGGGGTTTGGGTAAGGGGTTGagaaatattttaaaccctaaAAAAGGGGGTTTTAGAGTAAAAGAGGTTAAGAAACCCTGGATTAAACATAACTAAGTATTAGATTACACACTCTGACTTTTCTCTATGGAAATGAACCCttagaccctgtttacacctggtcaatTCATGAGTTTTGGgaatcaggattatatctggataaggccaaatcacataaaaatactaatataaaatatacaaaaaagaaaattaaaaactgaTAAATTAAAGCACTTCAGGAGGTGAAGAGTTGCCCATGATAATGATGACATCACAtattgtgattctgtgatactcaatatatcacaaaaaatcTCCATGATATTTTACAGCATCTGTGACACTGAATAATCCAATCTTAAATAATCAATCaaatagcaggaattatggatttattgtaGATTGAGAATTTAACAATCAATATTCTCACTGCAGTTTTCTTCATTCTATTTGATTAGTGCCAcgatgtggagtaatgaagcagtagtttagtaagtcaaattggggATTTATATTCAGTCTGAACATGGACTAAGATGTAGGATGAAGGTGAAACCTGTAGGACAGCAGCTCTCCAGGAGCCGGATTGGTGAGTCCTGGTCTAAACAGTGATTTTCTCTTCACTATGATCATCTGAAGTGATTTCCTTCCTTATGAAATGCAAGACCAcatgtaaaattaaatacaaagagACTGAACAGATACATAAACTGGTTGTCTTGTAACCATTGGATTTGCTTGGCTAatcaggatacaatccaggtacCAGCCACATAAAAAGAATCAGGTGTAAACGGGTCACATAACTTTGTGATTAATTTTCTTACTAAAAtcaggataaaaaaataatacacaataaaatacaacagtaaaaccatatataaaatatttatcatCAGTCAGCTCCCCAAACATTGGgattagagtaaaaaaaaaaaaagaaAAGAAATTTA

Function

NR:

description
PREDICTED: protein NLRC3-like, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211133 True 2263 lncRNA 0.37 4 1631865 1648626

Neighbor

gene id symbol gene type direction distance location
trip12 trip12,LOC107679016,LOC107710892 coding upstream 9693 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 174339 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 679385 927719 ~ 952480 (+)
sertad3 NA coding upstream 913160 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 918844 704355 ~ 713021 (+)
LOC103036673 NA coding downstream 4028 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 14352 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 43972 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 1022877 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1143413 2792039 ~ 2806754 (+)
G155669 NA non-coding upstream 34250 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 160443 1470141 ~ 1471422 (+)
LOC111194749 NA non-coding upstream 248221 1379727 ~ 1383644 (+)
G155581 NA non-coding upstream 249728 1381836 ~ 1382137 (+)
G155579 NA non-coding upstream 259953 1365000 ~ 1371912 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 29919 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 114781 1763407 ~ 1765707 (+)
G155718 NA non-coding downstream 125815 1774441 ~ 1776874 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 277808 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 926454 2575080 ~ 2575382 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 353603 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 408515 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 525073 1103450 ~ 1106792 (+)
G155206 NA other upstream 1478602 149347 ~ 153263 (+)
G155776 NA other downstream 1089735 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1962392 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2280705 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2927042 4575668 ~ 4637290 (+)
G156188 NA other downstream 3508528 5157154 ~ 5157400 (+)

Expression


Co-expression Network