G155680 (cd151l,LOC108410653,LOC105891114,LOC103368535)


Basic Information

Item Value
gene id G155680
gene name cd151l,LOC108410653,LOC105891114,LOC103368535
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1643959 ~ 1650935 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211136
CACTCTCAGGAGTCTTCTCTGCTCTTTGAAGGTGGCGCAGCATCCTAGGACCCCTGTAATCATGACGATCACCCCCGCCAGAATCAGGATATACGCAGACACAGCGTAGATCCTGGAGGAGAGCAGGCTGATGTAGTCACTCTTCGCTGCTACTGTCCATATCCCTACGGCCATCACAGCGCCTCCTGCCAGCCAAAACAGGAAGTTAAAAGTGAACAGCAGGTATTTCAGACAGACAGTTCCACATGTCCCTTTCTTTCCTTCGTACGCCCCCATtctgactgtgtgtgtttgtggagctTCAGAACCAGATCTTCTCGCTGATCCTCTACAGATGATCTTCTTCAGCTGAATCTCCACTGATCTGGGCCGTTAAAGTGTTTAGTTTATGGAGATTCTACGATTTAAAGTCAGTTACTCTCCTTCTCAGTCCCACTGCTCCTCCTCTGCCTGCGCTTTCAACACCAGCAACTTCCTGTGTG

Function

symbol description
cd151l Predicted to be involved in cell migration. Predicted to be located in membrane. Predicted to be integral component of membrane. Predicted to be integral component of plasma membrane. Is expressed in several structures, including epidermis; notochord; pharynx; pronephric duct; and ventricular zone. Orthologous to human CD151 (CD151 molecule (Raph blood group)).

NR:

description
PREDICTED: CD151 antigen-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211136 True 482 lncRNA 0.50 3 1643959 1650935

Neighbor

gene id symbol gene type direction distance location
trip12 trip12,LOC107679016,LOC107710892 coding upstream 21787 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 186433 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 691479 927719 ~ 952480 (+)
sertad3 NA coding upstream 925254 713909 ~ 718705 (+)
blvrb blvrb,LOC107692505 coding upstream 930938 704355 ~ 713021 (+)
LOC103036673 NA coding downstream 1719 1652654 ~ 1658962 (+)
LOC103036983 NA coding downstream 12043 1662978 ~ 1673194 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding downstream 41663 1692598 ~ 1905714 (+)
lrch3 lrch3,LOC103027580 coding downstream 1020568 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1141104 2792039 ~ 2806754 (+)
G155669 NA non-coding upstream 46344 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 172537 1470141 ~ 1471422 (+)
LOC111194749 NA non-coding upstream 260315 1379727 ~ 1383644 (+)
G155581 NA non-coding upstream 261822 1381836 ~ 1382137 (+)
G155579 NA non-coding upstream 272047 1365000 ~ 1371912 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding downstream 27610 1678545 ~ 1680366 (+)
G155717 NA non-coding downstream 112472 1763407 ~ 1765707 (+)
G155718 NA non-coding downstream 123506 1774441 ~ 1776874 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 275499 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 924145 2575080 ~ 2575382 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 365697 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 420609 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 537167 1103450 ~ 1106792 (+)
G155206 NA other upstream 1490696 149347 ~ 153263 (+)
G155776 NA other downstream 1087426 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1960083 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2278396 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2924733 4575668 ~ 4637290 (+)
G156188 NA other downstream 3506219 5157154 ~ 5157400 (+)

Expression


Co-expression Network