G155717


Basic Information

Item Value
gene id G155717
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 1763407 ~ 1765707 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211187
gacaaaacataaaatatctttggctcatactgtctgcaatgaaaCAAATGGCAAGgtaaatgaagaaagaaaatatatttgaagatGTAATTTTTCCATATACTGCTCCTTCAGTCCTGGTCCTAGTTtctgttttcagttttcagtttcttGTTATTTTTGGATGTTCAAAAAAACTGCAAAGCTGAATTTGTGCTTGTGGACGATTGTAGAGGGTTTCTGAAGCCTCAGCAAAAGATGTCTGGAGTTTTCCACACTTTCTAACTTTAGCATCTCTATCCCAGCTTGATGCAACCCTGCTGTTGTGACCATACTGAGGCCAGAAagtcagtttattattattaaaagaccTGCTAGTAATTTATAAAGATGTGTAGATACTTAGTATTACTTGATCGAAATCGTTTGGTACAAATGTTTTGATTCAATCATACAAATGCACTAGGAACACCTACAACCAACAACCAACatgggataccacagaaactgcatagcaacacctgagcaaccacctaagGCACTATAGAAACAAACCTAGAATACTGTAGCAATGGTCTAAcagccacatagcaacaccctagcaacacacaccaaactactaTTTCTTAGCCTAGAAAAATGAGTGCAACCAAGCCAAGTGCTGAAAATCAATATGGGAGcatcacatagcaacacctgagcaaccacctgaggCACTATAGAAACAAACCTAGGATACTATAGCAATGGCCTAAcagccacatagcaacaccctagcaacactcAATAAACTATGTCTTAGCCTAGACAAATAAGTGAAACCTAGCCAAGTGCTGAAAATCAACATGAAAAcatcacatagcaacacctgagcaaccacctgaggCACTATAGAAACAAACCTAGTATACTGTAGCAATGGCCtaacaaccacatagcaacaccctagcaacaccctagcaacattCACCAAACTATTTCTTAGCCTAGACAAATGAGTGCAACCAAGCCAAGTGCTGAAAATCAACATGAGAACAtcaaatagaaacacctgaacaACCACCTGATGTACTATAGAAACAAATTTAGGATGCTGTAGCAAAGGCCTAAcagccacatagcaacaccct

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211187 True 1109 lncRNA 0.39 2 1763407 1765707

Neighbor

gene id symbol gene type direction distance location
LOC103036983 NA coding upstream 90213 1662978 ~ 1673194 (+)
LOC103036673 NA coding upstream 104445 1652654 ~ 1658962 (+)
trip12 trip12,LOC107679016,LOC107710892 coding upstream 141235 1567115 ~ 1622172 (+)
LOC103025301 LOC108414026,LOC105012578,LOC107684602,LOC107711073,LOC107566685,LOC107714437,LOC107679025,LOC100332250 coding upstream 305881 1415407 ~ 1457526 (+)
daw1 daw1,LOC107717604,LOC107727686,LOC107576612 coding upstream 810927 927719 ~ 952480 (+)
lrch3 lrch3,LOC103027580 coding downstream 905796 2671503 ~ 2720959 (+)
parp9 NA coding downstream 1026332 2792039 ~ 2806754 (+)
LOC103044837 NA coding downstream 1117120 2882827 ~ 2938070 (+)
ndufa10 NA coding downstream 1177067 2942774 ~ 2963551 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 2092799 3858506 ~ 3899215 (+)
G155685 taldo1,LOC107711369,LOC107599753,LOC107728189,LOC107567494 non-coding upstream 83041 1678545 ~ 1680366 (+)
G155680 cd151l,LOC108410653,LOC105891114,LOC103368535 non-coding upstream 112472 1643959 ~ 1650935 (+)
G155677 NA non-coding upstream 114781 1631865 ~ 1648626 (+)
G155669 NA non-coding upstream 165792 1597104 ~ 1597615 (+)
G155576 NA non-coding upstream 291985 1470141 ~ 1471422 (+)
G155718 NA non-coding downstream 8734 1774441 ~ 1776874 (+)
G155722 ddb1,LOC102208280,LOC106561926 non-coding downstream 160727 1926434 ~ 1947167 (+)
G155750 NA non-coding downstream 809373 2575080 ~ 2575382 (+)
G155757 NA non-coding downstream 868455 2634162 ~ 2634608 (+)
G155762 NA non-coding downstream 933324 2699031 ~ 2719738 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 485145 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 540057 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 656615 1103450 ~ 1106792 (+)
G155206 NA other upstream 1610144 149347 ~ 153263 (+)
G155776 NA other downstream 972654 2738361 ~ 2755112 (+)
LOC111194753 NA other downstream 1845311 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 2163624 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 2809961 4575668 ~ 4637290 (+)
G156188 NA other downstream 3391447 5157154 ~ 5157400 (+)

Expression


Co-expression Network