G155854


Basic Information

Item Value
gene id G155854
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 2990959 ~ 2991367 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211350
TgactagtgctggacgatatggccaaaatttatatcacgatatattccttaaatttcggtcgatacgatataatttcgatatcgataaatactttgaaggcctcagaaaaagaatccctgcaatctctgcagcttgcactgcaaatttaaattattatttaactgtgtatttgcactttttgtatcaatctatctaatggaaatctgtacctactactgtatgaaaatgttttttaagtctttgaaacctcctttcacaaaaactttaatactttagaaataaaagtagtcaaaataaatcaatgctcaattttatttgcatatagcaaaataataacatgacatccctgtcaaacataagcctatataactattacaaataaaaataactttaaatgacaACAGAGGC

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211350 True 409 lncRNA 0.29 1 2990959 2991367

Neighbor

gene id symbol gene type direction distance location
ndufa10 NA coding upstream 27408 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 52889 2882827 ~ 2938070 (+)
parp9 NA coding upstream 184205 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 270000 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 1085245 1692598 ~ 1905714 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 867139 3858506 ~ 3899215 (+)
LOC103036562 hipk3 coding downstream 986385 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 1016959 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 1304952 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 1686836 4678203 ~ 4738405 (+)
G155809 NA non-coding upstream 162685 2827596 ~ 2828274 (+)
G155793 NA non-coding upstream 210588 2780128 ~ 2780371 (+)
G155792 NA non-coding upstream 211076 2779587 ~ 2779883 (+)
G155785 NA non-coding upstream 220106 2770090 ~ 2770853 (+)
G155765 NA non-coding upstream 256295 2734462 ~ 2734664 (+)
G155856 NA non-coding downstream 24337 3015704 ~ 3035326 (+)
LOC111194715 NA non-coding downstream 38208 3029575 ~ 3030986 (+)
G155866 NA non-coding downstream 128668 3120035 ~ 3121160 (+)
G155956 NA non-coding downstream 685265 3676632 ~ 3676857 (+)
G155967 NA non-coding downstream 777206 3768573 ~ 3769327 (+)
G155776 NA other upstream 235847 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 1712697 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 1767609 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 1884167 1103450 ~ 1106792 (+)
G155206 NA other upstream 2837696 149347 ~ 153263 (+)
LOC111194753 NA other downstream 619651 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 937964 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 1584301 4575668 ~ 4637290 (+)
G156188 NA other downstream 2165787 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 4102140 7093507 ~ 7171625 (+)

Expression


Co-expression Network