LOC111194715


Basic Information

Item Value
gene id LOC111194715
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3029575 ~ 3030986 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211355
CATTAACTAGGGCGCCAGCATTAGCGAGTCAGTGTGGTCCTGCAGGCACTTATATACGCACCTATAGGGGGTCCTATTGAAGGTAGCACTGTGTGGCTAAGCTAACGCGAGTAGCAGCGTGGGCTGGAGACGATTCTCTGAGCTAGTGAAGTACTCAGTGAGAACAGGAGTGCCCGAGGCTGAGCGACTGTGAGtggctataaatagcaacagtcTGTGTTTGTGCCTGGCGACGTGATATAAGAGGTAGGCTGGCTAATTATATGATATGCTGGGGTTAAGTtacactgtttgtttgttaactCTTGGCTAAGCTGCTTGTTAATCACTACTTATTCTgactaacttttttttacactctgtttgtttgttagctctTGGCTAAGCTGCTTGTTAATTCCTACTTATCCTGACTAACTTTGAAGGTATTTTTGATCAGGTAGGCTTAAACTATTGCACTTTTTAAAGTTCTGTAATAGTTTGATTATTTTAGCTTTGGTTGCTACCACTATATTTAACTGCTACCACTATAGTTAACACTAGTACTCTTTCGAATAGTTATCTGGGGGCTCTAGGTAAGATGTATGTCTCCATATGCTCTGTAATAGTAGGCAAGTGTCTGCTGCATTCTAATTGTACATTATTAGAGACACTATGCTTTTGAGCTGCTTTAGCTCCATGTGCTGTCCTGTAATAGTTTGAGTGTTTTAGCTTTGGTTGCTGCTATTATATTTAACTGCTACTACTACATTTAACACTAGTACCATTTCTAGAATGGTCACTTGGGGACTTTAGGTAAGATATGTCTCTATGTTCTGAACAGAATGCAAATGGGTTTTATATCATGTTTCAATTGCTTTTGTGTGATCTATTTCTATGAGTTTAAAGCTGCTACCCTGTCCATGGGCGAAGTTAGCATTCCACCTTGAGTTAAGTGAGAGCCACAGTTCCAGTGGTTGCCAGTTGctgttttctgctcttttttgtatttcttttttttattttttttgtttattctacCATAAATTTTGTAGCACTAAGTGTATTAACTGCTCAGgtatttttaagtattgtgGTTTTTAACTATGTGCTCTGTATAGACTCTAGCCTATTTGTAACCATGTGGTACAATTAGTCAATTTTAGCTGTGGCTATAATTGTTACTGGGACTGGGGGTTTGGAGTCAACCATATTCGGTTCTGTTGTCCTGTTCACTAGAAgtgtgattctttttttttgtacttagttttattttatttt
>XR_002651196.1
gtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgtgcgtgcaggtGCGGGGGGCGTGAACGAGTTACGTCATTAACTAGGGCGCCAGCATTAGCGAGTCAGTGTGGTCCTGCAGGCACTTATATACGCACCTATAGGGGGTCCTATTGAAGGTAGCACTGTGTGGCTAAGCTAACGCGAGTAGCAGCGTGGGCTGGAGACGATTCTCTGAGCTAGTGAAGTACTCAGTGAGAACAGGAGTGCCCGAGGCTGAGCGACTGTGAGtggctataaatagcaacagtcTGTGTTTGTGCCTGGCGACGTGATATAAGAGctctTGGCTAAGCTGCTTGTTAATTCCTACTTATCCTGACTAACTTTGAAGGTATTTTTGATCAGGTAGGCTTAAACTATTGCACTTT

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211355 True 1260 lncRNA 0.38 2 3029643 3030986
XR_002651196.1 False 402 lncRNA 0.50 2 3029575 3030104

Neighbor

gene id symbol gene type direction distance location
ndufa10 NA coding upstream 66024 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 91505 2882827 ~ 2938070 (+)
parp9 NA coding upstream 222821 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 308616 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 1123861 1692598 ~ 1905714 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 827520 3858506 ~ 3899215 (+)
LOC103036562 hipk3 coding downstream 946766 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 977340 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 1265333 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 1647217 4678203 ~ 4738405 (+)
G155854 NA non-coding upstream 38208 2990959 ~ 2991367 (+)
G155809 NA non-coding upstream 201301 2827596 ~ 2828274 (+)
G155793 NA non-coding upstream 249204 2780128 ~ 2780371 (+)
G155792 NA non-coding upstream 249692 2779587 ~ 2779883 (+)
G155785 NA non-coding upstream 258722 2770090 ~ 2770853 (+)
G155866 NA non-coding downstream 89049 3120035 ~ 3121160 (+)
G155956 NA non-coding downstream 645646 3676632 ~ 3676857 (+)
G155967 NA non-coding downstream 737587 3768573 ~ 3769327 (+)
G155976 NA non-coding downstream 815863 3846849 ~ 3847617 (+)
G155978 NA non-coding downstream 817469 3848455 ~ 3848872 (+)
G155776 NA other upstream 274463 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 1751313 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 1806225 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 1922783 1103450 ~ 1106792 (+)
G155206 NA other upstream 2876312 149347 ~ 153263 (+)
LOC111194753 NA other downstream 580032 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 898345 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 1544682 4575668 ~ 4637290 (+)
G156188 NA other downstream 2126168 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 4062521 7093507 ~ 7171625 (+)

Expression


Co-expression Network