G155866


Basic Information

Item Value
gene id G155866
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3120035 ~ 3121160 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211364
tgctaacagacacaacagcTGAGTTTAGCAGGGTTGGAGTtgggatgctaacagacacaacagcTGAGTTTAGCAGGGATGGAGTtgggatgctaacagacacaacagcTGAGTTTAGCAGGGATGGAGTTaggatgctaacagacacaacagcTGAGTTTAGCAGGGATGGAGTtgggatgctaacagacacaacagcTGAGTTTATCAGGGTTGGAGTtgtaatgct

Function

GO:

id name namespace
GO:0009259 ribonucleotide metabolic process biological_process
GO:0009260 ribonucleotide biosynthetic process biological_process
GO:1901293 nucleoside phosphate biosynthetic process biological_process
GO:0009117 nucleotide metabolic process biological_process
GO:0046390 ribose phosphate biosynthetic process biological_process
GO:0006753 nucleoside phosphate metabolic process biological_process
GO:0090407 organophosphate biosynthetic process biological_process
GO:1901137 carbohydrate derivative biosynthetic process biological_process
GO:0009165 nucleotide biosynthetic process biological_process
GO:0019693 ribose phosphate metabolic process biological_process

KEGG:

id description
ko00010 Glycolysis / Gluconeogenesis

RNA

RNA id representative length rna type GC content exon number start site end site
TU211364 True 229 lncRNA 0.47 2 3120035 3121160

Neighbor

gene id symbol gene type direction distance location
ndufa10 NA coding upstream 156484 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 181965 2882827 ~ 2938070 (+)
parp9 NA coding upstream 313281 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 399076 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 1214321 1692598 ~ 1905714 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 737346 3858506 ~ 3899215 (+)
LOC103036562 hipk3 coding downstream 856592 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 887166 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 1175159 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 1557043 4678203 ~ 4738405 (+)
G155856 NA non-coding upstream 84709 3015704 ~ 3035326 (+)
LOC111194715 NA non-coding upstream 89049 3029575 ~ 3030986 (+)
G155854 NA non-coding upstream 128668 2990959 ~ 2991367 (+)
G155809 NA non-coding upstream 291761 2827596 ~ 2828274 (+)
G155793 NA non-coding upstream 339664 2780128 ~ 2780371 (+)
G155956 NA non-coding downstream 555472 3676632 ~ 3676857 (+)
G155967 NA non-coding downstream 647413 3768573 ~ 3769327 (+)
G155976 NA non-coding downstream 725689 3846849 ~ 3847617 (+)
G155978 NA non-coding downstream 727295 3848455 ~ 3848872 (+)
G155985 NA non-coding downstream 785834 3906994 ~ 3907195 (+)
G155776 NA other upstream 364923 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 1841773 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 1896685 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 2013243 1103450 ~ 1106792 (+)
G155206 NA other upstream 2966772 149347 ~ 153263 (+)
LOC111194753 NA other downstream 489858 3611018 ~ 3614491 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 808171 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 1454508 4575668 ~ 4637290 (+)
G156188 NA other downstream 2035994 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 3972347 7093507 ~ 7171625 (+)

Expression


Co-expression Network