G155978


Basic Information

Item Value
gene id G155978
gene name NA
gene type non-coding
species mexican tetra (Astyanax mexicanus)
category of species ornamental fish

Chromosome Information

Item Value
chromosome id NC_035914.1
NCBI id CM008317.1
chromosome length 41377133
location 3848455 ~ 3848872 (+)
genome version Astyanax_mexicanus-2.0_2017_mexican_tetra_Genome

Sequence

>TU211505
gcttctttttcagccaacctcactactgctaaagctgaattttatcacaataaattctgctctctcacagactcccggaaactatttgctacatttaaatcactactcaaccctccgcctcctcctccggctacatgccttacggctgaaacacttgcctcattctttactggcaaagtggcggccatcagcaaccagtttactgatgcacaatgtagcagtcctactacatcctctactgcccggtgtccctccaccgaaggcgttgctttctcctcgttcactcctctcactgagaacgagacactggctctcctaacacgtagccgtcctactacgtgtccgcttgacccaattccttcaaacctactgcaaactatcgcacctgcaatcattccggctatcactcacacgatca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU211505 True 418 lncRNA 0.49 1 3848455 3848872

Neighbor

gene id symbol gene type direction distance location
ndufa10 NA coding upstream 884904 2942774 ~ 2963551 (+)
LOC103044837 NA coding upstream 910385 2882827 ~ 2938070 (+)
parp9 NA coding upstream 1041701 2792039 ~ 2806754 (+)
lrch3 lrch3,LOC103027580 coding upstream 1127496 2671503 ~ 2720959 (+)
tspan4 tspan4,tspan4a,LOC106561924 coding upstream 1942741 1692598 ~ 1905714 (+)
LOC103025504 LOC108425960,LOC108266765 coding downstream 9634 3858506 ~ 3899215 (+)
LOC103036562 hipk3 coding downstream 128880 3977752 ~ 3999462 (+)
LOC103036857 LOC108433503,LOC108264854 coding downstream 159454 4008326 ~ 4123480 (+)
LOC103029469 spon1,spon1a,LOC107741890 coding downstream 447447 4296319 ~ 4510540 (+)
LOC103037478 LOC108434021 coding downstream 829331 4678203 ~ 4738405 (+)
G155976 NA non-coding upstream 838 3846849 ~ 3847617 (+)
G155967 NA non-coding upstream 79128 3768573 ~ 3769327 (+)
G155956 NA non-coding upstream 171598 3676632 ~ 3676857 (+)
G155866 NA non-coding upstream 727295 3120035 ~ 3121160 (+)
G155856 NA non-coding upstream 813129 3015704 ~ 3035326 (+)
G155985 NA non-coding downstream 58122 3906994 ~ 3907195 (+)
G156009 NA non-coding downstream 112022 3960894 ~ 4005992 (+)
G156050 NA non-coding downstream 339634 4188506 ~ 4188789 (+)
G156060 NA non-coding downstream 396379 4245251 ~ 4245521 (+)
G156062 NA non-coding downstream 398950 4247822 ~ 4248039 (+)
LOC111194753 NA other upstream 233964 3611018 ~ 3614491 (+)
G155776 NA other upstream 1093343 2738361 ~ 2755112 (+)
G155491 akt2,LOC107711004,LOC107557843,LOC107692744,LOC107572728,LOC107714435,LOC108264340 other upstream 2570193 1187146 ~ 1278262 (+)
LOC103036073 LOC106581333,LOC102227031,LOC105940324 other upstream 2625105 1203741 ~ 1223350 (+)
LOC103044527 NA other upstream 2741663 1103450 ~ 1106792 (+)
LOC103025196 arl4c,LOC103025196,LOC108425959,LOC108267031,LOC107104020 other downstream 80459 3929331 ~ 3932163 (+)
LOC103030011 LOC108433937,LOC108264032,LOC106573278,LOC106561481 other downstream 726796 4575668 ~ 4637290 (+)
G156188 NA other downstream 1308282 5157154 ~ 5157400 (+)
ptprq ptprq,LOC108413201,LOC107705767,LOC107686600,LOC107564908 other downstream 3244635 7093507 ~ 7171625 (+)
LOC111194759 NA other downstream 3523504 7372376 ~ 7431568 (+)

Expression


Co-expression Network